Section: Infections
Topic: Biology of interactions, Genetics/genomics, Microbiology

Celebrating the 20th anniversary of the first Xanthomonas genome sequences – how genomics revolutionized taxonomy, provided insight into the emergence of pathogenic bacteria, enabled new fundamental discoveries and helped developing novel control measures – a perspective from the French network on Xanthomonads

10.24072/pcjournal.385 - Peer Community Journal, Volume 4 (2024), article no. e19.

Get full text PDF Peer reviewed and recommended by PCI

In this Opinion paper, members of the French Network on Xanthomonads give their personal view on what they consider to be some of the groundbreaking discoveries in the field of molecular plant pathology over the past 20 years. By celebrating the 20th anniversary of the first Xanthomonas genome sequences, they explain how genomics revolutionized taxonomy, provided insight into the emergence of pathogenic bacteria, enabled new fundamental discoveries and contributed to the development of novel control measures. Collectively, such new, genomics-enabled perspective will help to ensure sustainable agriculture and conservation of our environment in the future.

Published online:
DOI: 10.24072/pcjournal.385
Type: Historical Commentary
Keywords: Genomics, Xanthomonas, Xylella fastidiosa, Taxonomy, Phylogeny, Epidemiology, Emergence, Host specificity, Tissue specificity, Protein secretion, Effector protein, TAL effector, Plant resistance, Disease control, Phage therapy, Nanoparticle
Koebnik, Ralf 1; Cesbron, Sophie 2; Chen, Nicolas W. G. 2; Fischer-Le Saux, Marion 3, 2; Hutin, Mathilde 1; Jacques, Marie-Agnès 2; Noël, Laurent D. 4; Perez-Quintero, Alvaro 1; Portier, Perrine 3, 2; Pruvost, Olivier 5; Rieux, Adrien 5; Szurek, Boris 1

1 Plant Health Institute of Montpellier, University of Montpellier, CIRAD, INRAE, Institut Agro, IRD, F-34000 Montpellier, France
2 Univ Angers, Institut Agro, INRAE, IRHS, SFR QUASAV, F-49000 Angers, France
3 Univ Angers, Institut Agro, INRAE, IRHS, SFR QUASAV, CIRM-CFBP, F-49000 Angers, France
4 LIPME, Université de Toulouse, INRAE, CNRS, F-31320 Castanet-Tolosan, France
5 CIRAD, UMR PVBMT, F-97410 Saint Pierre, La Réunion, France
License: CC-BY 4.0
Copyrights: The authors retain unrestricted copyrights and publishing rights
@article{10_24072_pcjournal_385,
     author = {Koebnik, Ralf and Cesbron, Sophie and Chen, Nicolas W. G. and Fischer-Le Saux, Marion and Hutin, Mathilde and Jacques, Marie-Agn\`es and No\"el, Laurent D. and Perez-Quintero, Alvaro and Portier, Perrine and Pruvost, Olivier and Rieux, Adrien and Szurek, Boris},
     title = {Celebrating the 20\protect\textsuperscript{th} anniversary of the first {\protect\emph{Xanthomonas}} genome sequences {\textendash} how genomics revolutionized taxonomy, provided insight into the emergence of pathogenic bacteria, enabled new fundamental discoveries and helped developing novel control measures {\textendash} a perspective from the {French} network on {Xanthomonads}},
     journal = {Peer Community Journal},
     eid = {e19},
     publisher = {Peer Community In},
     volume = {4},
     year = {2024},
     doi = {10.24072/pcjournal.385},
     language = {en},
     url = {https://peercommunityjournal.org/articles/10.24072/pcjournal.385/}
}
TY  - JOUR
AU  - Koebnik, Ralf
AU  - Cesbron, Sophie
AU  - Chen, Nicolas W. G.
AU  - Fischer-Le Saux, Marion
AU  - Hutin, Mathilde
AU  - Jacques, Marie-Agnès
AU  - Noël, Laurent D.
AU  - Perez-Quintero, Alvaro
AU  - Portier, Perrine
AU  - Pruvost, Olivier
AU  - Rieux, Adrien
AU  - Szurek, Boris
TI  - Celebrating the 20th anniversary of the first Xanthomonas genome sequences – how genomics revolutionized taxonomy, provided insight into the emergence of pathogenic bacteria, enabled new fundamental discoveries and helped developing novel control measures – a perspective from the French network on Xanthomonads
JO  - Peer Community Journal
PY  - 2024
VL  - 4
PB  - Peer Community In
UR  - https://peercommunityjournal.org/articles/10.24072/pcjournal.385/
DO  - 10.24072/pcjournal.385
LA  - en
ID  - 10_24072_pcjournal_385
ER  - 
%0 Journal Article
%A Koebnik, Ralf
%A Cesbron, Sophie
%A Chen, Nicolas W. G.
%A Fischer-Le Saux, Marion
%A Hutin, Mathilde
%A Jacques, Marie-Agnès
%A Noël, Laurent D.
%A Perez-Quintero, Alvaro
%A Portier, Perrine
%A Pruvost, Olivier
%A Rieux, Adrien
%A Szurek, Boris
%T Celebrating the 20th anniversary of the first Xanthomonas genome sequences – how genomics revolutionized taxonomy, provided insight into the emergence of pathogenic bacteria, enabled new fundamental discoveries and helped developing novel control measures – a perspective from the French network on Xanthomonads
%J Peer Community Journal
%D 2024
%V 4
%I Peer Community In
%U https://peercommunityjournal.org/articles/10.24072/pcjournal.385/
%R 10.24072/pcjournal.385
%G en
%F 10_24072_pcjournal_385
Koebnik, Ralf; Cesbron, Sophie; Chen, Nicolas W. G.; Fischer-Le Saux, Marion; Hutin, Mathilde; Jacques, Marie-Agnès; Noël, Laurent D.; Perez-Quintero, Alvaro; Portier, Perrine; Pruvost, Olivier; Rieux, Adrien; Szurek, Boris. Celebrating the 20th anniversary of the first Xanthomonas genome sequences – how genomics revolutionized taxonomy, provided insight into the emergence of pathogenic bacteria, enabled new fundamental discoveries and helped developing novel control measures – a perspective from the French network on Xanthomonads. Peer Community Journal, Volume 4 (2024), article  no. e19. doi : 10.24072/pcjournal.385. https://peercommunityjournal.org/articles/10.24072/pcjournal.385/

Peer reviewed and recommended by PCI : 10.24072/pci.infections.100193

Conflict of interest of the recommender and peer reviewers:
The recommender in charge of the evaluation of the article and the reviewers declared that they have no conflict of interest (as defined in the code of conduct of PCI) with the authors or with the content of the article.

[1] Adlung, N.; Prochaska, H.; Thieme, S.; Banik, A.; Bluher, D.; John, P.; Nagel, O.; Schulze, S.; Gantner, J.; Delker, C.; Stuttmann, J.; Bonas, U. Non-host Resistance Induced by the Xanthomonas Effector XopQ Is Widespread within the Genus Nicotiana and Functionally Depends on EDS1, Frontiers in Plant Science, Volume 7 (2016), p. 1796 | DOI

[2] Alegria, M. C.; Souza, D. P.; Andrade, M. O.; Docena, C.; Khater, L.; Ramos, C. H. I.; da Silva, A. C. R.; Farah, C. S. Identification of New Protein-Protein Interactions Involving the Products of the Chromosome- and Plasmid-Encoded Type IV Secretion Loci of the Phytopathogen Xanthomonas axonopodis pv. citri, Journal of Bacteriology, Volume 187 (2005) no. 7, pp. 2315-2325 | DOI

[3] Almeida, R. P. P. Can Apulia's olive trees be saved?, Science, Volume 353 (2016) no. 6297, pp. 346-348 | DOI

[4] Antony, G.; Zhou, J.; Huang, S.; Li, T.; Liu, B.; White, F.; Yang, B. Rice xa13 Recessive Resistance to Bacterial Blight Is Defeated by Induction of the Disease Susceptibility Gene Os-11N3, The Plant Cell, Volume 22 (2010) no. 11, pp. 3864-3876 | DOI

[5] Arroyo-Velez, N.; González-Fuente, M.; Peeters, N.; Lauber, E.; Noël, L. D. From effectors to effectomes: Are functional studies of individual effectors enough to decipher plant pathogen infectious strategies?, PLoS Pathogens, Volume 16 (2020) no. 12, p. e1009059 | DOI

[6] Bansal, K.; Kumar, S.; Patil, P. B. Phylo-taxonogenomics supports revision of taxonomic status of twenty Xanthomonas pathovars to Xanthomonas citri, Phytopathology, Volume 112 (2022), pp. 1201-1207 | DOI

[7] Barrera-Paez, J. D.; Moraes, C. T. Mitochondrial genome engineering coming-of-age, Trends in Genetics, Volume 38 (2022) no. 8, pp. 869-880 | DOI

[8] Bayer-Santos, E.; Cenens, W.; Matsuyama, B. Y.; Oka, G. U.; Di Sessa, G.; Mininel, I. D. V.; Alves, T. L.; Farah, C. S. The opportunistic pathogen Stenotrophomonas maltophilia utilizes a type IV secretion system for interbacterial killing, PLoS Pathogens, Volume 15 (2019) no. 9, p. e1007651 | DOI

[9] Becker, S.; Boch, J. TALE and TALEN genome editing technologies, Gene and Genome Editing, Volume 2 (2021), p. 100007 | DOI

[10] Begley, S. Medical first: Gene-editing tool used to treat girl's cancer, STAT. Reporting from the frontiers of health and medicine, 2015 (https://www.statnews.com/2015/11/05/doctors-report-first-use-gene-editing-technology-patient/)

[11] Boch, J.; Scholze, H.; Schornack, S.; Landgraf, A.; Hahn, S.; Kay, S.; Lahaye, T.; Nickstadt, A.; Bonas, U. Breaking the Code of DNA Binding Specificity of TAL-Type III Effectors, Science, Volume 326 (2009) no. 5959, pp. 1509-1512 | DOI

[12] Bogdanove, A. J.; Koebnik, R.; Lu, H.; Furutani, A.; Angiuoli, S. V.; Patil, P. B.; Van Sluys, M.-A.; Ryan, R. P.; Meyer, D. F.; Han, S.-W.; Aparna, G.; Rajaram, M.; Delcher, A. L.; Phillippy, A. M.; Puiu, D.; Schatz, M. C.; Shumway, M.; Sommer, D. D.; Trapnell, C.; Benahmed, F.; Dimitrov, G.; Madupu, R.; Radune, D.; Sullivan, S.; Jha, G.; Ishihara, H.; Lee, S.-W.; Pandey, A.; Sharma, V.; Sriariyanun, M.; Szurek, B.; Vera-Cruz, C. M.; Dorman, K. S.; Ronald, P. C.; Verdier, V.; Dow, J. M.; Sonti, R. V.; Tsuge, S.; Brendel, V.; Rabinowicz, P. D.; Leach, J. E.; White, F. F.; Salzberg, S. L. Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp., Journal of Bacteriology, Volume 193 (2011) no. 19, pp. 5450-5464 | DOI

[13] Bonas, U.; Stall, R. E.; Staskawicz, B. Genetic and structural characterization of the avirulence gene avrBs3 from Xanthomonas campestris pv. vesicatoria, Molecular and General Genetics, Volume 218 (1989) no. 1, pp. 127-136 | DOI

[14] Bragard, C.; Dehnen-Schmutz, K.; Di Serio, F.; Gonthier, P.; Jacques, M.-A.; Jaques Miret, J. A.; Justesen, A. F.; MacLeod, A.; Magnusson, C. S.; Milonas, P.; Navas-Cortés, J. A.; Potting, R.; Reignault, P. L.; Thulke, H.-H.; van der Werf, W.; Vicent Civera, A.; Yuen, J.; Zappalà, L.; Boscia, D.; Chapman, D.; Gilioli, G.; Krugner, R.; Mastin, A.; Simonetto, A.; Spotti Lopes, J. R.; White, S.; Abrahantes, J. C.; Delbianco, A.; Maiorano, A.; Mosbach-Schulz, O.; Stancanelli, G.; Guzzo, M.; Parnell, S. Update of the Scientific Opinion on the risks to plant health posed by Xylella fastidiosa in the EU territory, EFSA Journal, Volume 17 (2019) no. 5, p. e05665 | DOI

[15] Campos, P. E.; Pruvost, O.; Boyer, K.; Chiroleu, F.; Cao, T. T.; Gaudeul, M.; Baider, C.; Utteridge, T. M. A.; Becker, N.; Rieux, A.; Gagnevin, L. Herbarium specimen sequencing allows precise dating of Xanthomonas citri pv. citri diversification history, Nature Communications, Volume 14 (2023) no. 1, p. 4306 | DOI

[16] Castillo, A. I.; Bojanini, I.; Chen, H.; Kandel, P. P.; De La Fuente, L.; Almeida, R. P. P. Allopatric Plant Pathogen Population Divergence following Disease Emergence, Applied and Environmental Microbiology, Volume 87 (2021) no. 7, pp. e02095-20 | DOI

[17] Cenens, W.; Andrade, M. O.; Llontop, E.; Alvarez-Martinez, C. E.; Sgro, G. G.; Farah, C. S. Bactericidal type IV secretion system homeostasis in Xanthomonas citri, PLoS Pathogens, Volume 16 (2020) no. 5, p. e1008561 | DOI

[18] Cesbron, S.; Dupas, E.; Jacques, M.-A. Evaluation of the AmplifyRP XRT+ kit for the detection of Xylella fastidiosa by recombinase polymerase amplification, PhytoFrontiers, Volume 3 (2023) no. 1, pp. 225-234 | DOI

[19] Chen, L.-Q.; Hou, B.-H.; Lalonde, S.; Takanaga, H.; Hartung, M. L.; Qu, X.-Q.; Guo, W.-J.; Kim, J.-G.; Underwood, W.; Chaudhuri, B.; Chermak, D.; Antony, G.; White, F. F.; Somerville, S. C.; Mudgett, M. B.; Frommer, W. B. Sugar transporters for intercellular exchange and nutrition of pathogens, Nature, Volume 468 (2010) no. 7323, pp. 527-532 | DOI

[20] Christian, M.; Cermak, T.; Doyle, E. L.; Schmidt, C.; Zhang, F.; Hummel, A.; Bogdanove, A. J.; Voytas, D. F. Targeting DNA double-strand breaks with TAL effector nucleases, Genetics, Volume 186 (2010) no. 2, pp. 757-761 | DOI

[21] Cohen, B. H. Mitochondrial and Metabolic Myopathies, Continuum Lifelong Learning in Neurology (Muscle and Neuromuscular Junction Disorders), Volume 25 (2019) no. 6, pp. 1732-1766 | DOI

[22] Constantin, E. C.; Cleenwerck, I.; Maes, M.; Baeyen, S.; Van Malderghem, C.; De Vos, P.; Cottyn, B. Genetic characterization of strains named as Xanthomonas axonopodis pv. dieffenbachiae leads to a taxonomic revision of the X. axonopodis species complex, Plant Pathology, Volume 65 (2016) no. 5, pp. 792-806 | DOI

[23] Cunnac, S.; Chakravarthy, S.; Kvitko, B. H.; Russell, A. B.; Martin, G. B.; Collmer, A. Genetic disassembly and combinatorial reassembly identify a minimal functional repertoire of type III effectors in Pseudomonas syringae, Proceedings of the National Academy of Sciences, Volume 108 (2011) no. 7, pp. 2975-2980 | DOI

[24] Da Silva, A. C. R.; Ferro, J. A.; Reinach, F. C.; Farah, C. S.; Furlan, L. R.; Quaggio, R. B.; Monteiro-Vitorello, C. B.; Van Sluys, M. A.; Almeida, N. F.; Alves, L. M. C.; do Amaral, A. M.; Bertolini, M. C.; Camargo, L. E. A.; Camarotte, G.; Cannavan, F.; Cardozo, J.; Chambergo, F.; Ciapina, L. P.; Cicarelli, R. M. B.; Coutinho, L. L.; Cursino-Santos, J. R.; El-Dorry, H.; Faria, J. B.; Ferreira, A. J. S.; Ferreira, R. C. C.; Ferro, M. I. T.; Formighieri, E. F.; Franco, M. C.; Greggio, C. C.; Gruber, A.; Katsuyama, A. M.; Kishi, L. T.; Leite, R. P.; Lemos, E. G. M.; Lemos, M. V. F.; Locali, E. C.; Machado, M. A.; Madeira, A. M. B. N.; Martinez-Rossi, N. M.; Martins, E. C.; Meidanis, J.; Menck, C. F. M.; Miyaki, C. Y.; Moon, D. H.; Moreira, L. M.; Novo, M. T. M.; Okura, V. K.; Oliveira, M. C.; Oliveira, V. R.; Pereira, H. A.; Rossi, A.; Sena, J. A. D.; Silva, C.; de Souza, R. F.; Spinola, L. A. F.; Takita, M. A.; Tamura, R. E.; Teixeira, E. C.; Tezza, R. I. D.; Trindade dos Santos, M.; Truffi, D.; Tsai, S. M.; White, F. F.; Setubal, J. C.; Kitajima, J. P. Comparison of the genomes of two Xanthomonas pathogens with differing host specificities, Nature, Volume 417 (2002) no. 6887, pp. 459-463 | DOI

[25] Dhakate, P.; Sehgal, D.; Vaishnavi, S.; Chandra, A.; Singh, A.; Raina, S. N.; Rajpal, V. R. Comprehending the evolution of gene editing platforms for crop trait improvement, Frontiers in Genetics, Volume 13 (2022), p. 876987 | DOI

[26] Dobzhansky, T. Nothing in Biology Makes Sense except in the Light of Evolution, The American Biology Teacher, Volume 35 (1973) no. 3, pp. 125-129 | DOI

[27] Donegan, M. A.; Coletta-Filho, H. D.; Almeida, R. P. P. Parallel host shifts in a bacterial plant pathogen suggest independent genetic solutions, Molecular Plant Pathology, Volume 24 (2023) no. 6, pp. 527-535 | DOI

[28] Dupas, E.; Durand, K.; Rieux, A.; Briand, M.; Pruvost, O.; Cunty, A.; Denancé, N.; Donnadieu, C.; Legendre, B.; Lopez-Roques, C.; Cesbron, S.; Ravigné, V.; Jacques, M.-A. Suspicions of two bridgehead invasions of Xylella fastidiosa subsp. multiplex in France, Communications Biology, Volume 6 (2023) no. 1, p. 103 | DOI

[29] Eckardt, N. A. Cytoplasmic Male Sterility and Fertility Restoration, The Plant Cell, Volume 18 (2006) no. 3, pp. 515-517 | DOI

[30] European Food Safety Authority 4th European conference on Xylella fastidiosa 2023, Zenodo, 2023 | DOI

[31] Farris, J. S. Estimating Phylogenetic Trees from Distance Matrices, The American Naturalist, Volume 106 (1972) no. 951, pp. 645-667 | DOI

[32] Ferreira-Tonin, M.; Rodrigues-Neto, J.; Harakava, R.; Destéfano, S. A. L. Phylogenetic analysis of Xanthomonas based on partial rpoB gene sequences and species differentiation by PCR-RFLP, International Journal of Systematic and Evolutionary Microbiology, Volume 62 (2012) no. 6, pp. 1419-1424 | DOI

[33] Flor, H. H. Host-parasite interaction in flax rust – its genetics and other implications, Phytopathology, Volume 45 (1955), pp. 680-685

[34] Forner, J.; Kleinschmidt, D.; Meyer, E. H.; Gremmels, J.; Morbitzer, R.; Lahaye, T.; Schöttler, M. A.; Bock, R. Targeted knockout of a conserved plant mitochondrial gene by genome editing, Nature Plants, Volume 9 (2023) no. 11, pp. 1818-1831 | DOI

[35] Geiβler, R.; Scholze, H.; Hahn, S.; Streubel, J.; Bonas, U.; Behrens, S.-E.; Boch, J. Transcriptional Activators of Human Genes with Programmable DNA-Specificity, PLoS ONE, Volume 6 (2011) no. 5 | DOI

[36] Gerlin, L.; Cottret, L.; Cesbron, S.; Taghouti, G.; Jacques, M.-A.; Genin, S.; Baroukh, C. Genome-Scale Investigation of the Metabolic Determinants Generating Bacterial Fastidious Growth, mSystems, Volume 5 (2020) no. 2, pp. e00698-19 | DOI

[37] Gluck-Thaler, E.; Cerutti, A.; Perez-Quintero, A. L.; Butchacas, J.; Roman-Reyna, V.; Madhavan, V. N.; Shantharaj, D.; Merfa, M. V.; Pesce, C.; Jauneau, A.; Vancheva, T.; Lang, J. M.; Allen, C.; Verdier, V.; Gagnevin, L.; Szurek, B.; Beckham, G. T.; De La Fuente, L.; Patel, H. K.; Sonti, R. V.; Bragard, C.; Leach, J. E.; Noël, L. D.; Slot, J. C.; Koebnik, R.; Jacobs, J. M. Repeated gain and loss of a single gene modulates the evolution of vascular plant pathogen lifestyles, Science advances, Volume 6 (2020) no. 46, p. eabc4516 | DOI

[38] Gottwald, T.; Poole, G.; McCollum, T.; Hall, D.; Hartung, J.; Bai, J.; Luo, W.; Posny, D.; Duan, Y.-P.; Taylor, E.; da Graça, J.; Polek, M.; Louws, F.; Schneider, W. Canine olfactory detection of a vectored phytobacterial pathogen, Liberibacter asiaticus, and integration with disease control, Proceedings of the National Academy of Sciences, Volume 117 (2020) no. 7, pp. 3492-3501 | DOI

[39] Gu, K.; Yang, B.; Tian, D.; Wu, L.; Wang, D.; Sreekala, C.; Yang, F.; Chu, Z.; Wang, G.-L.; White, F. F.; Yin, Z. R gene expression induced by a type-III effector triggers disease resistance in rice, Nature, Volume 435 (2005) no. 7045, pp. 1122-1125 | DOI

[40] Hajri, A.; Brin, C.; Hunault, G.; Lardeux, F.; Lemaire, C.; Manceau, C.; Boureau, T.; Poussier, S. A "repertoire for repertoire" hypothesis: repertoires of type three effectors are candidate determinants of host specificity in Xanthomonas, PloS One, Volume 4 (2009) no. 8, p. e6632 | DOI

[41] Harris, J. M.; Balint-Kurti, P.; Bede, J. C.; Day, B.; Gold, S.; Goss, E. M.; Grenville-Briggs, L. J.; Jones, K. M.; Wang, A.; Wang, Y.; Mitra, R. M.; Sohn, K. H.; Alvarez, M. E. What are the Top 10 Unanswered Questions in Molecular Plant-Microbe Interactions?, Molecular Plant-Microbe Interactions, Volume 33 (2020) no. 12, pp. 1354-1365 | DOI

[42] Harrison, J.; Hussain, R. M. F.; Aspin, A.; Grant, M. R.; Vicente, J. G.; Studholme, D. J. Phylogenomic Analysis Supports the Transfer of 20 Pathovars from Xanthomonas campestris into Xanthomonas euvesicatoria, Taxonomy, Volume 3 (2023) no. 1, pp. 29-45 | DOI

[43] Hauben, L.; Vauterin, L.; Swings, J.; Moore, E. R. Comparison of 16S ribosomal DNA sequences of all Xanthomonas species, International Journal of Systematic Bacteriology, Volume 47 (1997) no. 2, pp. 328-335 | DOI

[44] Hayward, A. C.; Fegan, N.; Fegan, M.; Stirling, G. R. Stenotrophomonas and Lysobacter: ubiquitous plant-associated gamma-proteobacteria of developing significance in applied microbiology, Journal of Applied Microbiology, Volume 108 (2010) no. 3, pp. 756-770 | DOI

[45] Herbers, K.; Conrads-Strauch, J.; Bonas, U. Race-specificity of plant resistance to bacterial spot disease determined by repetitive motifs in a bacterial avirulence protein, Nature, Volume 356 (1992) no. 6365, pp. 172-174 | DOI

[46] Hutin, M.; Sabot, F.; Ghesquiere, A.; Koebnik, R.; Szurek, B. A knowledge-based molecular screen uncovers a broad spectrum OsSWEET14 resistance allele to bacterial blight from wild rice, The Plant Journal, Volume 84 (2015), pp. 694-703 | DOI

[47] Jacobs, J. M.; Pesce, C.; Lefeuvre, P.; Koebnik, R. Comparative genomics of a cannabis pathogen reveals insight into the evolution of pathogenicity in Xanthomonas, Frontiers in Plant Science, Volume 6 (2015), p. 431 | DOI

[48] Jacques, M.-A.; Arlat, M.; Boulanger, A.; Boureau, T.; Carrere, S.; Cesbron, S.; Chen, N. W. G.; Cociancich, S.; Darrasse, A.; Denance, N.; Fischer-Le Saux, M.; Gagnevin, L.; Koebnik, R.; Lauber, E.; Noel, L. D.; Pieretti, I.; Portier, P.; Pruvost, O.; Rieux, A.; Robene, I.; Royer, M.; Szurek, B.; Verdier, V.; Verniere, C. Using Ecology, Physiology, and Genomics to Understand Host Specificity in Xanthomonas: French Network on Xanthomonads (FNX), Annual Review of Phytopathology, Volume 54 (2016), pp. 163-187 | DOI

[49] Ji, Z.; Ji, C.; Liu, B.; Zou, L.; Chen, G.; Yang, B. Interfering TAL effectors of Xanthomonas oryzae neutralize R-gene-mediated plant disease resistance, Nature Communications, Volume 7 (2016), p. 13435 | DOI

[50] Jones, J. D. G.; Dangl, J. L. The plant immune system, Nature, Volume 444 (2006) no. 7117, pp. 323-329 | DOI

[51] Kay, S.; Hahn, S.; Marois, E.; Hause, G.; Bonas, U. A Bacterial Effector Acts as a Plant Transcription Factor and Induces a Cell Size Regulator, Science, Volume 318 (2007) no. 5850, pp. 648-651 | DOI

[52] Kay, S.; Hahn, S.; Marois, E.; Wieduwild, R.; Bonas, U. Detailed analysis of the DNA recognition motifs of the Xanthomonas type III effectors AvrBs3 and AvrBs3Δrep16, The Plant Journal, Volume 59 (2009) no. 6, pp. 859-871 | DOI

[53] Khanna, K.; Sharma, N.; Ohri, P.; Bhardwaj, R. Emerging Trends of Nanoparticles in Sustainable Agriculture: Current and Future Perspectives, Plant and Nanoparticles, Springer Nature Singapore, Singapore, 2022, pp. 1-52 | DOI

[54] Khlidj, Y. What did CRISPR-Cas9 accomplish in its first 10 years?, Biochemia medica, Volume 33 (2023) no. 3, pp. 283-294 | DOI

[55] Koebnik R; Cesbron S; Chen Nwg; Fischer-Le Saux M; Hutin M; Jacques M-A; Noël Ld; Perez-Quintero A; Portier P; Pruvost O; Rieux A; Szurek B Celebrating the 20th Anniversary of the First Xanthomonas Genome Sequences – How Genomics Revolutionized Taxonomy, Provided Insight into the Emergence of Pathogenic Bacteria, Enabled New Fundamental Discoveries and Helped Developing Novel Control Measures – A Perspective from the French Network on Xanthomonads, Zenodo, 2024 | DOI

[56] Konstantinidis, K. T.; Tiedje, J. M. Genomic insights that advance the species definition for prokaryotes, Proceedings of the National Academy of Sciences, Volume 102 (2005) no. 7, pp. 2567-2572 | DOI

[57] Kung, S. H.; Almeida, R. P. P. Natural competence and recombination in the plant pathogen Xylella fastidiosa., Applied and Environmental Microbiology, Volume 77 (2011) no. 15, pp. 5278-5284 | DOI

[58] Landa, B. B.; Saponari, M.; Feitosa-Junior, O. R.; Giampetruzzi, A.; Vieira, F. J. D.; Mor, E.; Robatzek, S. Xylella fastidiosa's relationships: the bacterium, the host plants, and the plant microbiome, The New Phytologist, Volume 234 (2022) no. 5, pp. 1598-1605 | DOI

[59] Larsson, D. G. J.; Flach, C.-F. Antibiotic resistance in the environment, Nature Reviews Microbiology, Volume 20 (2021) no. 5, pp. 257-269 | DOI

[60] Lefort, V.; Desper, R.; Gascuel, O. FastME 2.0: A Comprehensive, Accurate, and Fast Distance-Based Phylogeny Inference Program: Table 1., Molecular Biology and Evolution, Volume 32 (2015) no. 10, pp. 2798-2800 | DOI

[61] Li, C.; Wang, L.; Cseke, L. J.; Vasconcelos, F.; Huguet-Tapia, J. C.; Gassmann, W.; Pauwels, L.; White, F. F.; Dong, H.; Yang, B. Efficient CRISPR-Cas9 based cytosine base editors for phytopathogenic bacteria, Communications Biology, Volume 6 (2023) no. 1, p. 56 | DOI

[62] Li, T.; Huang, S.; Jiang, W. Z.; Wright, D.; Spalding, M. H.; Weeks, D. P.; Yang, B. TAL nucleases (TALNs): hybrid proteins composed of TAL effectors and FokI DNA-cleavage domain, Nucleic Acids Research, Volume 39 (2011) no. 1, pp. 359-372 | DOI

[63] Li, T.; Liu, B.; Spalding, M. H.; Weeks, D. P.; Yang, B. High-efficiency TALEN-based gene editing produces disease-resistant rice, Nature Biotechnology, Volume 30, 2012 no. 5, pp. 390-392 | DOI

[64] Mafakheri, H.; Taghavi, S. M.; Zarei, S.; Portier, P.; Dimkić, I.; Koebnik, R.; Kuzmanović, N.; Osdaghi, E. Xanthomonas bonasiae sp. nov. and Xanthomonas youngii sp. nov., isolated from crown gall tissues, International Journal of Systematic and Evolutionary Microbiology, Volume 72 (2022) no. 6 | DOI

[65] Mahfouz, M. M.; Li, L.; Shamimuzzaman, M.; Wibowo, A.; Fang, X.; Zhu, J.-K. De novo-engineered transcription activator-like effector (TALE) hybrid nuclease with novel DNA binding specificity creates double-strand breaks, Proceedings of the National Academy of Sciences, Volume 108 (2011) no. 6, pp. 2623-2628 | DOI

[66] Maliga, P. Engineering the plastid and mitochondrial genomes of flowering plants, Nature Plants, Volume 8 (2022) no. 9, pp. 996-1006 | DOI

[67] Martinetti, D.; Soubeyrand, S. Identifying Lookouts for Epidemio-Surveillance: Application to the Emergence of Xylella fastidiosa in France, Phytopathology, Volume 109 (2019) no. 2, pp. 265-276 | DOI

[68] Martins, L.; Fernandes, C.; Blom, J.; Dia, N. C.; Pothier, J. F.; Tavares, F. Xanthomonas euroxanthea sp. nov., a new xanthomonad species including pathogenic and non-pathogenic strains of walnut, International Journal of Systematic and Evolutionary Microbiology, Volume 70 (2020) no. 12, pp. 6024-6031 | DOI

[69] Meier-Kolthoff, J. P.; Carbasse, J. S.; Peinado-Olarte, R. L.; Göker, M. TYGS and LPSN: a database tandem for fast and reliable genome-based classification and nomenclature of prokaryotes, Nucleic Acids Research, Volume 50 (2022) no. D1, p. D801-D807 | DOI

[70] Merda, D.; Bonneau, S.; Guimbaud, J.-F.; Durand, K.; Brin, C.; Boureau, T.; Lemaire, C.; Jacques, M.-A.; Fischer-Le Saux, M. Recombination-prone bacterial strains form a reservoir from which epidemic clones emerge in agroecosystems, Environmental Microbiology Reports, Volume 8 (2016), pp. 572-581 | DOI

[71] Merda, D.; Briand, M.; Bosis, E.; Rousseau, C.; Portier, P.; Barret, M.; Jacques, M.-A.; Fischer-Le Saux, M. Ancestral acquisitions, gene flow and multiple evolutionary trajectories of the type three secretion system and effectors in Xanthomonas plant pathogens, Molecular Ecology, Volume 26 (2017), pp. 5939-5952 | DOI

[72] Meyer, D. F. Advancing Pathogen Genomics: A Comprehensive Review of the Xanthomonas(*) Genome's Impact on Bacterial Research and Control Strategies, Peer Community In Infections (2024) | DOI

[73] Miller, J. C.; Tan, S.; Qiao, G.; Barlow, K. A.; Wang, J.; Xia, D. F.; Meng, X.; Paschon, D. E.; Leung, E.; Hinkley, S. J.; Dulay, G. P.; Hua, K. L.; Ankoudinova, I.; Cost, G. J.; Urnov, F. D.; Zhang, H. S.; Holmes, M. C.; Zhang, L.; Gregory, P. D.; Rebar, E. J. A TALE nuclease architecture for efficient genome editing, Nature Biotechnology, Volume 29 (2011) no. 2, pp. 143-148 | DOI

[74] Mok, B. Y.; de Moraes, M. H.; Zeng, J.; Bosch, D. E.; Kotrys, A. V.; Raguram, A.; Hsu, F.; Radey, M. C.; Peterson, S. B.; Mootha, V. K.; Mougous, J. D.; Liu, D. R. A bacterial cytidine deaminase toxin enables CRISPR-free mitochondrial base editing, Nature, Volume 583 (2020) no. 7817, pp. 631-637 | DOI

[75] Moralejo, E.; Borràs, D.; Gomila, M.; Montesinos, M.; Adrover, F.; Juan, A.; Nieto, A.; Olmo, D.; Seguí, G.; Landa, B. B. Insights into the epidemiology of Pierce's disease in vineyards of Mallorca, Spain, Plant Pathology, Volume 68 (2019) no. 8, pp. 1458-1471 | DOI

[76] Moralejo, E.; Gomila, M.; Montesinos, M.; Borràs, D.; Pascual, A.; Nieto, A.; Adrover, F.; Gost, P. A.; Seguí, G.; Busquets, A.; Jurado-Rivera, J. A.; Quetglas, B.; García, J. d. D.; Beidas, O.; Juan, A.; Velasco-Amo, M. P.; Landa, B. B.; Olmo, D. Phylogenetic inference enables reconstruction of a long-overlooked outbreak of almond leaf scorch disease (Xylella fastidiosa) in Europe, Communications Biology, Volume 3 (2020) no. 1, p. 560 | DOI

[77] Morbitzer, R.; Römer, P.; Boch, J.; Lahaye, T. Regulation of selected genome loci using de novo-engineered transcription activator-like effector (TALE)-type transcription factors, Proceedings of the National Academy of Sciences, Volume 107 (2010) no. 50, pp. 21617-21622 | DOI

[78] Morinière, L.; Burlet, A.; Rosenthal, E. R.; Nesme, X.; Portier, P.; Bull, C. T.; Lavire, C.; Fischer-Le Saux, M.; Bertolla, F. Clarifying the taxonomy of the causal agent of bacterial leaf spot of lettuce through a polyphasic approach reveals that Xanthomonas cynarae Trébaol et al. 2000 emend. Timilsina et al. 2019 is a later heterotypic synonym of Xanthomonas hortorum Vauterin et al. 1995, Systematic and Applied Microbiology, Volume 43 (2020) no. 4 | DOI

[79] Moscou, M. J.; Bogdanove, A. J. A Simple Cipher Governs DNA Recognition by TAL Effectors, Science, Volume 326 (2009) no. 5959, p. 1501-1501 | DOI

[80] Nas, M. Y.; Gabell, J.; Cianciotto, N. P. Effectors of the Stenotrophomonas maltophilia Type IV Secretion System Mediate Killing of Clinical Isolates of Pseudomonas aeruginosa, mBio, Volume 12 (2021) no. 3, p. e0150221 | DOI

[81] Naushad, S.; Adeolu, M.; Wong, S.; Sohail, M.; Schellhorn, H. E.; Gupta, R. S. A phylogenomic and molecular marker based taxonomic framework for the order Xanthomonadales: proposal to transfer the families Algiphilaceae and Solimonadaceae to the order Nevskiales ord. nov. and to create a new family within the order Xanthomonadales, the family Rhodanobacteraceae fam. nov., containing the genus Rhodanobacter and its closest relatives, Antonie van Leeuwenhoek, Volume 107 (2014) no. 2, pp. 467-485 | DOI

[82] Negi, C.; Vasistha, N. K.; Singh, D.; Vyas, P.; Dhaliwal, H. S. Application of CRISPR-Mediated Gene Editing for Crop Improvement, Molecular Biotechnology, Volume 64 (2022) no. 11, pp. 1198-1217 | DOI

[83] Nomura, W. Development of Toolboxes for Precision Genome/Epigenome Editing and Imaging of Epigenetics, The Chemical Record, Volume 18 (2018) no. 12, pp. 1717-1726 | DOI

[84] Oka, G. U.; Souza, D. P.; Cenens, W.; Matsuyama, B. Y.; Cardoso, M. V. C.; Oliveira, L. C.; da Silva Lima, F.; Cuccovia, I. M.; Guzzo, C. R.; Salinas, R. K.; Farah, C. S. Structural basis for effector recognition by an antibacterial type IV secretion system, Proceedings of the National Academy of Sciences, Volume 119 (2021) no. 1 | DOI

[85] Parkinson, N.; Cowie, C.; Heeney, J.; Stead, D. Phylogenetic structure of Xanthomonas determined by comparison of gyrB sequences, International Journal of Systematic and Evolutionary Microbiology, Volume 59 (2009) no. 2, pp. 264-274 | DOI

[86] Peng, H.; Borg, R. E.; Dow, L. P.; Pruitt, B. L.; Chen, I. A. Controlled phage therapy by photothermal ablation of specific bacterial species using gold nanorods targeted by chimeric phages, Proceedings of the National Academy of Sciences, Volume 117 (2020) no. 4, pp. 1951-1961 | DOI

[87] Peng, H.; Chen, I. A. Rapid Colorimetric Detection of Bacterial Species through Capture of Gold Nanoparticles by Chimeric Phages, ACS Nano, Volume 13 (2018), pp. 1244-1252 | DOI

[88] Potnis, N.; Kandel, P. P.; Merfa, M. V.; Retchless, A. C.; Parker, J. K.; Stenger, D. C.; Almeida, R. P. P.; Bergsma-Vlami, M.; Westenberg, M.; Cobine, P. A.; De La Fuente, L. Patterns of inter- and intrasubspecific homologous recombination inform eco-evolutionary dynamics of Xylella fastidiosa, The ISME Journal, Volume 13 (2019) no. 9, pp. 2319-2333 | DOI

[89] Qasim, W.; Zhan, H.; Samarasinghe, S.; Adams, S.; Amrolia, P.; Stafford, S.; Butler, K.; Rivat, C.; Wright, G.; Somana, K.; Ghorashian, S.; Pinner, D.; Ahsan, G.; Gilmour, K.; Lucchini, G.; Inglott, S.; Mifsud, W.; Chiesa, R.; Peggs, K. S.; Chan, L.; Farzeneh, F.; Thrasher, A. J.; Vora, A.; Pule, M.; Veys, P. Molecular remission of infant B-ALL after infusion of universal TALEN gene-edited CAR T cells, Science Translational Medicine, Volume 9 (2017) no. 374, p. eaaj2013 | DOI

[90] Qi, Q.; Hu, B.; Jiang, W.; Wang, Y.; Yan, J.; Ma, F.; Guan, Q.; Xu, J. Advances in Plant Epigenome Editing Research and Its Application in Plants, International Journal of Molecular Sciences, Volume 24 (2023) no. 4, p. 3442 | DOI

[91] Rademaker, J. L. W.; Louws, F. J.; Schultz, M. H.; Rossbach, U.; Vauterin, L.; Swings, J.; de Bruijn, F. J. A Comprehensive Species to Strain Taxonomic Framework for Xanthomonas, Phytopathology, Volume 95 (2005) no. 9, pp. 1098-1111 | DOI

[92] Rapicavoli, J.; Ingel, B.; Blanco-Ulate, B.; Cantu, D.; Roper, C. Xylella fastidiosa: an examination of a re-emerging plant pathogen, Molecular Plant Pathology, Volume 19 (2018) no. 4, pp. 786-800 | DOI

[93] Read, A. C.; Rinaldi, F. C.; Hutin, M.; He, Y.-Q.; Triplett, L. R.; Bogdanove, A. J. Suppression of Xo1-Mediated Disease Resistance in Rice by a Truncated, Non-DNA-Binding TAL Effector of Xanthomonas oryzae, Frontiers in Plant Science, Volume 7 (2016), p. 1516 | DOI

[94] Richard, D.; Ravigne, V.; Rieux, A.; Facon, B.; Boyer, C.; Boyer, K.; Grygiel, P.; Javegny, S.; Terville, M.; Canteros, B. I.; Robene, I.; Verniere, C.; Chabirand, A.; Pruvost, O.; Lefeuvre, P. Adaptation of genetically monomorphic bacteria: evolution of copper resistance through multiple horizontal gene transfers of complex and versatile mobile genetic elements, Molecular Ecology, Volume 26 (2017), pp. 2131-2149 | DOI

[95] Richter, A.; Streubel, J.; Blücher, C.; Szurek, B.; Reschke, M.; Grau, J.; Boch, J. A TAL effector repeat architecture for frameshift binding, Nature Communications, Volume 5 (2014), p. 3447 | DOI

[96] Römer, P.; Hahn, S.; Jordan, T.; Strauß, T.; Bonas, U.; Lahaye, T. Plant Pathogen Recognition Mediated by Promoter Activation of the Pepper Bs3 Resistance Gene, Science, Volume 318 (2007) no. 5850, pp. 645-648 | DOI

[97] Ruiz-Bedoya, T.; Wang, P. W.; Desveaux, D.; Guttman, D. S. Cooperative virulence via the collective action of secreted pathogen effectors, Nature Microbiology, Volume 8 (2023) no. 4, pp. 640-650 | DOI

[98] Römer, P.; Recht, S.; Lahaye, T. A single plant resistance gene promoter engineered to recognize multiple TAL effectors from disparate pathogens, Proceedings of the National Academy of Sciences, Volume 106 (2009) no. 48, pp. 20526-20531 | DOI

[99] Sahu, S.; Poplawska, M.; Lim, S. H.; Dutta, D. CRISPR-based precision medicine for hematologic disorders: Advancements, challenges, and prospects, Life Sciences, Volume 333 (2023), p. 122165 | DOI

[100] Scally, M.; Schuenzel, E. L.; Stouthamer, R.; Nunney, L. Multilocus sequence type system for the plant pathogen Xylella fastidiosa and relative contributions of recombination and point mutation to clonal diversity, Applied and Environmental Microbiology, Volume 71 (2005) no. 12, pp. 8491-8499 | DOI

[101] Scholze, H.; Boch, J. TAL effectors are remote controls for gene activation, Current Opinion in Microbiology, Volume 14 (2011) no. 1, pp. 47-53 | DOI

[102] Schornack, S.; Boch, J. Unraveling a 20-Year Enigma, IS-MPMI Reporter, Volume 1 (2010), pp. 3-4

[103] Sgro, G. G.; Oka, G. U.; Souza, D. P.; Cenens, W.; Bayer-Santos, E.; Matsuyama, B. Y.; Bueno, N. F.; Dos Santos, T. R.; Alvarez-Martinez, C. E.; Salinas, R. K.; Farah, C. S. Bacteria-Killing Type IV Secretion Systems, Frontiers in Microbiology, Volume 10 (2019), p. 1078 | DOI

[104] Shen, X.; Wang, B.; Yang, N.; Zhang, L.; Shen, D.; Wu, H.; Dong, Y.; Niu, B.; Chou, S.-H.; Puopolo, G.; Fan, J.; Qian, G. Lysobacter enzymogenes antagonizes soilborne bacteria using the type IV secretion system, Environmental Microbiology, Volume 23 (2021) no. 8, pp. 4673-4688 | DOI

[105] Sicard, A.; Zeilinger, A. R.; Vanhove, M.; Schartel, T. E.; Beal, D. J.; Daugherty, M. P.; Almeida, R. P. P. Xylella fastidiosa: Insights into an Emerging Plant Pathogen, Annual Review of Phytopathology, Volume 56 (2018), pp. 181-202 | DOI

[106] Simpson, A. J.; Reinach, F. C.; Arruda, P.; Abreu, F. A.; Acencio, M.; Alvarenga, R.; Alves, L. M. C.; Araya, J. E.; Baia, G. S.; Baptista, C. S.; Barros, M. H.; Bonaccorsi, E. D.; Bordin, S.; Bové, J. M.; Briones, M. R.; Bueno, M. R.; Camargo, A. A.; Camargo, L. E. A.; Carraro, D. M.; Carrer, H.; Colauto, N. B.; Colombo, C.; Costa, F. F.; Costa, M. C.; Costa-Neto, C. M.; Coutinho, L. L.; Cristofani, M.; Dias-Neto, E.; Docena, C.; El-Dorry, H.; Facincani, A. P.; Ferreira, A. J. S.; Ferreira, V. C.; Ferro, J. A.; Fraga, J. S.; França, S. C.; Franco, M. C.; Frohme, M.; Furlan, L. R.; Garnier, M.; Goldman, G. H.; Goldman, M. H.; Gomes, S. L.; Gruber, A.; Ho, P. L.; Hoheisel, J. D.; Junqueira, M. L.; Kemper, E. L.; Kitajima, J. P.; Krieger, J. E.; Kuramae, E. E.; Laigret, F.; Lambais, M. R.; Leite, L. C.; Lemos, E. G. M.; Lemos, M. V. F.; Lopes, S. A.; Lopes, C. R.; Machado, J. A.; Machado, M. A.; Madeira, A. M.; Madeira, H. M.; Marino, C. L.; Marques, M. V.; Martins, E. A.; Martins, E. M.; Matsukuma, A. Y.; Menck, C. F. M.; Miracca, E. C.; Miyaki, C. Y.; Monteiro-Vitorello, C. B.; Moon, D. H.; Nagai, M. A.; Nascimento, A. L.; Netto, L. E.; Nhani, A.; Nobrega, F. G.; Nunes, L. R.; Oliveira, M. A.; de Oliveira, M. C.; de Oliveira, R. C.; Palmieri, D. A.; Paris, A.; Peixoto, B. R.; Pereira, G. A.; Pereira, H. A.; Pesquero, J. B.; Quaggio, R. B.; Roberto, P. G.; Rodrigues, V.; de M Rosa, A. J.; de Rosa, V. E.; de Sá, R. G.; Santelli, R. V.; Sawasaki, H. E.; da Silva, A. C. R.; da Silva, A. M.; da Silva, F. R.; da Silva, W. A.; da Silveira, J. F.; Silvestri, M. L.; Siqueira, W. J.; de Souza, A. A.; de Souza, A. P.; Terenzi, M. F.; Truffi, D.; Tsai, S. M.; Tsuhako, M. H.; Vallada, H.; Van Sluys, M.-A.; Verjovski-Almeida, S.; Vettore, A. L.; Zago, M. A.; Zatz, M.; Meidanis, J.; Setubal, J. C. The genome sequence of the plant pathogen Xylella fastidiosa. The Xylella fastidiosa Consortium of the Organization for Nucleotide Sequencing and Analysis, Nature, Volume 406 (2000) no. 6792, pp. 151-159 | DOI

[107] Smith, J. M.; Feil, E. J.; Smith, N. H. Population structure and evolutionary dynamics of pathogenic bacteria., BioEssays, Volume 22 (2000) no. 12, pp. 1115-1122 | DOI

[108] Souza, D. P.; Oka, G. U.; Alvarez-Martinez, C. E.; Bisson-Filho, A. W.; Dunger, G.; Hobeika, L.; Cavalcante, N. S.; Alegria, M. C.; Barbosa, L. R. S.; Salinas, R. K.; Guzzo, C. R.; Farah, C. S. Bacterial killing via a type IV secretion system, Nature Communications, Volume 6 (2015), p. 6453 | DOI

[109] Strathdee, S. A.; Hatfull, G. F.; Mutalik, V. K.; Schooley, R. T. Phage therapy: From biological mechanisms to future directions, Cell, Volume 186 (2023) no. 1, pp. 17-31 | DOI

[110] Strauß, T.; van Poecke, R. M. P.; Strauß, A.; Römer, P.; Minsavage, G. V.; Singh, S.; Wolf, C.; Strauß, A.; Kim, S.; Lee, H.-A.; Yeom, S.-I.; Parniske, M.; Stall, R. E.; Jones, J. B.; Choi, D.; Prins, M.; Lahaye, T. RNA-seq pinpoints a Xanthomonas TAL-effector activated resistance gene in a large-crop genome, Proceedings of the National Academy of Sciences, Volume 109 (2012) no. 47, pp. 19480-19485 | DOI

[111] Streubel, J.; Pesce, C.; Hutin, M.; Koebnik, R.; Boch, J.; Szurek, B. Five phylogenetically close rice SWEET genes confer TAL effector-mediated susceptibility to Xanthomonas oryzae pv. oryzae, The New Phytologist, Volume 200 (2013) no. 3, pp. 808-819 | DOI

[112] Swarup, S.; De Feyter, R.; Brlansky, R. H.; Gabriel, D. W. A pathogenicity locus from Xanthomonas citri enables strains from several pathovars of X. campestris to elicit cankerlike lesions on citrus, Phytopathology, Volume 81 (1991), pp. 802-809 | DOI

[113] Triplett, L. R.; Verdier, V.; Campillo, T.; Van Malderghem, C.; Cleenwerck, I.; Maes, M.; Deblais, L.; Corral, R.; Koita, O.; Cottyn, B.; Leach, J. E. Characterization of a novel clade of Xanthomonas isolated from rice leaves in Mali and proposal of Xanthomonas maliensis sp. nov., Antonie van Leeuwenhoek, Volume 107 (2015) no. 4, pp. 869-881 | DOI

[114] Vanhove, M.; Retchless, A. C.; Sicard, A.; Rieux, A.; Coletta-Filho, H. D.; De La Fuente, L.; Stenger, D. C.; Almeida, R. P. P. Genomic Diversity and Recombination among Xylella fastidiosa Subspecies, Applied and Environmental Microbiology, Volume 85 (2019) no. 13, pp. e02972-18 | DOI

[115] Vauterin, L.; Hoste, B.; Kersters, K.; Swings, J. Reclassification of Xanthomonas, International Journal of Systematic Bacteriology, Volume 45 (1995) no. 3, pp. 472-489 | DOI

[116] Vicente, J. G.; Rothwell, S.; Holub, E. B.; Studholme, D. J. Pathogenic, phenotypic and molecular characterisation of Xanthomonas nasturtii sp. nov. and Xanthomonas floridensis sp. nov., new species of Xanthomonas associated with watercress production in Florida, International Journal of Systematic and Evolutionary Microbiology, Volume 67 (2017) no. 9, pp. 3645-3654 | DOI

[117] Wernham, C. C. The species value of pathogenicity in the genus Xanthomonas, Phytopathology, Volume 38 (1948), pp. 283-291

[118] Wu, Q.; Wang, B.; Shen, X.; Shen, D.; Wang, B.; Guo, Q.; Li, T.; Shao, X.; Qian, G. Unlocking the bacterial contact-dependent antibacterial activity to engineer a biocontrol alliance of two species from natural incompatibility to artificial compatibility, Stress Biology, Volume 1 (2021) no. 1, p. 19 | DOI

[119] Yang, B.; Sugio, A.; White, F. F. Os8N3 is a host disease-susceptibility gene for bacterial blight of rice, Proceedings of the National Academy of Sciences, Volume 103 (2006) no. 27, pp. 10503-10508 | DOI

[120] Yang, B.; Zhu, W.; Johnson, L. B.; White, F. F. The virulence factor AvrXa7 of Xanthomonas oryzae pv. oryzae is a type III secretion pathway-dependent nuclear-localized double-stranded DNA-binding prot, Proceedings of the National Academy of Sciences, Volume 97 (2000) no. 17, pp. 9807-9812 | DOI

[121] Young, J. M.; Park, D.-C.; Shearman, H. M.; Fargier, E. A multilocus sequence analysis of the genus Xanthomonas, Systematic and Applied Microbiology, Volume 31 (2008) no. 5, pp. 366-377 | DOI

[122] Young, J. M.; Wilkie, J. P.; Park, D.-C.; Watson, D. R. W. New Zealand strains of plant pathogenic bacteria classified by multi-locus sequence analysis; proposal of Xanthomonas dyei sp. nov., Plant Pathology, Volume 59 (2010) no. 2, pp. 270-281 | DOI

[123] Zarco-Tejada, P. J.; Camino, C.; Beck, P. S. A.; Calderon, R.; Hornero, A.; Hernández-Clemente, R.; Kattenborn, T.; Montes-Borrego, M.; Susca, L.; Morelli, M.; Gonzalez-Dugo, V.; North, P. R. J.; Landa, B. B.; Boscia, D.; Saponari, M.; Navas-Cortes, J. A. Previsual symptoms of Xylella fastidiosa infection revealed in spectral plant-trait alterations, Nature Plants, Volume 4 (2018) no. 7, pp. 432-439 | DOI

[124] Zarei, S.; Taghavi, S. M.; Rahimi, T.; Mafakheri, H.; Potnis, N.; Koebnik, R.; Fischer-Le Saux, M.; Pothier, J. F.; Palacio-Bielsa, A.; Cubero, J.; Portier, P.; Jacques, M.-A.; Osdaghi, E. Taxonomic Refinement of Xanthomonas arboricola, Phytopathology, Volume 112 (2022), pp. 1630-1639 | DOI

[125] Zhang, F.; Cong, L.; Lodato, S.; Kosuri, S.; Church, G. M.; Arlotta, P. Efficient construction of sequence-specific TAL effectors for modulating mammalian transcription, Nature Biotechnology, Volume 29 (2011) no. 2, pp. 149-153 | DOI

[126] Zhao, J.; Grant, S. F. A. Advances in whole genome sequencing technology, Current Pharmaceutical Biotechnology, Volume 12 (2011) no. 2, pp. 293-305 | DOI

[127] European Food Safety Authority Statement of EFSA on host plants, entry and spread pathways and risk reduction options for Xylella fastidiosa Wells et al, EFSA Journal, Volume 11 (2013), p. 3468 | DOI

Cited by Sources: