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  Section: Ecotoxicology & Environmental Chemistry ; Topics: Environmental sciences, Applied biological sciences

  Vineyard footprint revealed by honey bees used as sentinels for organic and inorganic contaminants in contrasted environments

  Tison, Léa;   Franc, Céline;   Burkart, Louisiane;   Larrue, Camille; Grosgeorge, Camille ; Dalix, Thierry ; Rusch, Adrien ;   Le Provost, Gaëtane;   de Revel, Gilles ;   Thiéry, Denis  

  10.24072/pcjournal.774 - Peer Community Journal, Volume 6 (2026), article no. e85

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  The contamination of non-target organisms by elements and pesticides can adversely affect biodiversity and key ecosystem services such as pollination. In this study, we used honey bee colonies as sentinels of environmental contamination in four distinct habitats - urban, suburban, forest, and vineyard - and collected bees every three weeks from May to November. Pesticide residues were extracted using an adapted QuEChERS method and analyzed by LC-MS/MS, while inorganic major and trace elements were measured by ICP-MS and ICP-AES. Our results show that land-use and seasonal changes shape contaminant profiles in bees. Bees from vineyards exhibited the highest contaminant diversity and loads, indicating a particularly intense contamination profile in this environment. This reflects exposure to multiple pesticide inputs - such as copper - which can accumulate over time to potentially harmful levels. Pollinators like honey bees provide effective indicators of environmental risk, as their contaminant loads may affect honey bee health and can reveal broader ecological impacts.

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  Section: Evolutionary Biology ; Topics: Evolution, Ecology, Plant biology

  Architectural traits constrain the evolution of unisexual flowers and sexual segregation within inflorescences: an interspecific approach

  Torices, Rubén;   Afonso, Ana;   Anderberg, Arne A.;   Gómez, José M.;   Méndez, Marcos  

  10.24072/pcjournal.739 - Peer Community Journal, Volume 6 (2026), article no. e84

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  Male and female unisexual flowers have repeatedly evolved from the ancestral bisexual flowers in different lineages of flowering plants. This sex specialization in different flowers often occurs within inflorescences. We hypothesize that inflorescence architecture may impose a constraint on resource availability for late flowers, potentially leading to different optima in floral sex allocation and unisexuality. Under this hypothesis we expect that inflorescence traits increasing the difference in resource availability between early and late flowers would be phylogenetically correlated with a higher level of sexual specialization. To test this hypothesis, we performed a comparative analysis of inflorescence traits (inflorescence size, number of flowers and flower density) in the sunflower family, which displays an extraordinary variation in floral sexual specialization at the inflorescence level, i.e. hermaphroditic, gynomonoecious and monoecious species. We found that species with a complete sex separation in unisexual flowers (monoecy) had significantly denser inflorescences. Furthermore, those species arranging their flowers in denser inflorescences also showed greater differences in the size of early and late fruits, a proxy of resource variation between flowers. Our findings support the idea that floral sexual specialization and consequently sexual segregation may be the consequence of different floral sex allocation optima driven by the sequential development of flowers that results in a persistent resource decline from earlier to later flowers.

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  Section: Ecology ; Topics: Ecology

  Urbanisation and habitat loss favour thermophilic and monogynous ant species

  Finand, Basile;   Monnin, Thibaud;   Bocquet, Céline; Bultelle, Angélique; Fédérici, Pierre;   Darmedru, Léa; Gouffault, Solène; Ledamoisel, Joséphine; Loeuille, Nicolas  

  10.24072/pcjournal.775 - Peer Community Journal, Volume 6 (2026), article no. e83

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  Environmental changes such as urbanisation and related habitat loss and fragmentation profoundly impact ecological communities by altering habitats, resources, and microclimates. Yet, the impacts of the resulting environmental conditions on metacommunity dynamics, ranging from species sorting to mass effects, remain a subject of debate. Ants, with diverse life histories and strong ecological effects, are ideal model species to study these pressures. We investigated the response of ant communities, including taxonomic and functional diversity, to urbanisation and habitat fragmentation in the Paris region, comparing wooded areas in 25 urban parks vs. 24 rural forests outside the city. We found a clear difference in species composition between urban and rural environments, with a higher prevalence of thermophilic species and a tendency for monogyny in the city. Forest communities were homogeneous across the size levels we studied, while park communities differed noticeably depending on park size, with larger parks harbouring more species. Our findings suggest that urbanisation selects specific ant traits and favours more thermophilic species, thereby increasing the mean thermal preference of urban communities. These selective effects influence which species can colonise and survive in different patches, shaping metacommunity structure and potentially affecting the resilience of ant communities under climate change.

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  Section: Genomics ; Topics: Genetics/genomics, Microbiology, Computer sciences

  ViroSeek: a viral detection pipeline for second-generation sequencing

  Berger, Audric;   Lefebvre, Margaux J.M.;   Dainat, Jacques;   Jiolle, Davy;   Moltini-Conclois, Isabelle;   Talignani, Loic;   Mastriani, Emilio;   Cornelie, Sylvie;   Berthet, Nicolas;   Paupy, Christophe  

  10.24072/pcjournal.767 - Peer Community Journal, Volume 6 (2026), article no. e82

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  Arbovirus emergences represent a rising public health issue and are exacerbated by climate change and globalization. Virome analysis has become a key approach for monitoring and managing infectious diseases, yet existing tools often remain technically complex and inaccessible to non-specialists. In this context, we present ViroSeek, a reproducible and accessible bioinformatics pipeline specifically designed for the taxonomic analysis of second-generation sequencing data from target-enriched libraries. ViroSeek performs a series of automated steps: quality control, trimming, host and bacterial sequence removal, assembly, taxonomic assignment, read remapping for quantification, and PCR duplicate removal. The whole process is designed to produce a clear, usable viral taxonomy table that is suitable for diversity studies. ViroSeek was empirically validated on enriched control samples containing a known panel of viruses. All the expected viruses were correctly detected. Bacterial and host contaminant sequences were effectively removed. The pipeline is freely available and fully documented, supporting its adoption and adaptation by the research community.