Latest Articles
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Ecology
Consistent individual positions within roosts in Spix’s disc-winged bats
10.24072/pcjournal.350 - Peer Community Journal, Volume 3 (2023), article no. e115.
Get full text PDFIndividuals within both moving and stationary groups arrange themselves in a predictable manner; for example, some individuals are consistently found at the front of the group or in the periphery and others in the center. Each position may be associated with various costs, such as greater exposure to predators, and benefits, such as preferential access to food. In social bats, we would expect a similar consistent arrangement for groups at roost-sites, which is where these mammals spend the largest portion of their lives. Here we study the relative position of individuals within a roost-site and establish if sex, age, and vocal behavior are associated with a given position. We focus on the highly cohesive and mobile social groups found in Spix’s disc-winged bats (Thyroptera tricolor) given this species’ use of a tubular roosting structure that forces individuals to be arranged linearly within its internal space. We obtained high scores for linearity measures, particularly for the top and bottom positions, indicating that bats position themselves in a predictable way despite constant roost-switching. We also found that sex and age were associated with the use of certain positions within the roost; for example, males and subadults tend to occupy the top part (near the roost’s entrance) more often than expected by chance. Our results demonstrate, for the first time, that bats are capable of maintaining a consistent and predictable position within their roosts despite having to relocate daily, and that there is a link between individual traits and position preferences.
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Evolutionary Biology
Landscape connectivity alters the evolution of density-dependent dispersal during pushed range expansions
10.24072/pcjournal.347 - Peer Community Journal, Volume 3 (2023), article no. e114.
Get full text PDFAs human influence reshapes communities worldwide, many species expand or shift their ranges as a result, with extensive consequences across levels of biological organization. Range expansions can be ranked on a continuum going from pulled dynamics, in which low-density edge populations provide the “fuel” for the advance, to pushed dynamics in which high-density rear populations “push” the expansion forward. While theory suggests that evolution during range expansions could lead pushed expansions to become pulled with time, empirical comparisons of phenotypic divergence in pushed vs. pulled contexts are lacking. In a previous experiment using Trichogramma brassicae wasps as a model, we showed that expansions were more pushed when connectivity was lower. Here we used descendants from these experimental landscapes to look at how the range expansion process and connectivity interact to shape phenotypic evolution. Interestingly, we found no clear and consistent phenotypic shifts, whether along expansion gradients or between reference and low connectivity replicates, when we focused on low-density trait expression. However, we found evidence of changes in density-dependence, in particular regarding dispersal: populations went from positive to negative density-dependent dispersal at the expansion edge, but only when connectivity was high. As positive density-dependent dispersal leads to pushed expansions, our results confirm predictions that evolution during range expansions may lead pushed expansions to become pulled, but add nuance by showing landscape conditions may slow down or cancel this process. This shows we need to jointly consider evolution and landscape context to accurately predict range expansion dynamics and their consequences.
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Ecology
Influence of mimicry on extinction risk in Aculeata: a theoretical approach
10.24072/pcjournal.342 - Peer Community Journal, Volume 3 (2023), article no. e113.
Get full text PDFPositive ecological interactions can play a role in community structure and species co-existence. A well-documented case of mutualistic interaction is Mullerian mimicry, the convergence of colour pattern in defended species living in sympatry. By reducing predation pressure, Mullerian mimicry may limit local extinction risks of defended species, but this positive effect can be weakened by undefended mimics (Batesian mimicry). While mimicry was well-studied in neotropical butterflies, it remains surprisingly poorly studied in wasps and bees (Hymenoptera: Aculeata). However, only females are defended in Aculeata and this female-limited defence may modulate the effect of Mullerian mimicry on extinction risks. Here, we focus on the effect of Mullerian mimicry on extinction risk in Aculeata, using a population dynamics model for two species. We show that Mullerian mimicry has a positive effect on species co-existence, but this effect depends on the sex-ratio. We found that the probability of extinction increases as the proportion of undefended males increases in the population, however co-existence still occurs if females are sufficiently abundant or noxious. Furthermore, we detected a destabilising effect of dual sex-limited mimicry (when each sex resembles a different model) on species co-existence. In a context of massive population decline caused by anthropic activities, our findings highlight the potential importance of Mullerian mimicry as an overlooked mechanism linked to extinction risk in wasp and bee species.
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Paleontology
PaleoProPhyler: a reproducible pipeline for phylogenetic inference using ancient proteins
10.24072/pcjournal.344 - Peer Community Journal, Volume 3 (2023), article no. e112.
Get full text PDFAncient proteins from fossilized or semi-fossilized remains can yield phylogenetic information at broad temporal horizons, in some cases even millions of years into the past. In recent years, peptides extracted from archaic hominins and long-extinct mega-fauna have enabled unprecedented insights into their evolutionary history. In contrast to the field of ancient DNA - where several computational methods exist to process and analyze sequencing data - few tools exist for handling ancient protein sequence data. Instead, most studies rely on loosely combined custom scripts, which makes it difficult to reproduce results or share methodologies across research groups. Here, we present PaleoProPhyler: a new fully reproducible pipeline for aligning ancient peptide data and subsequently performing phylogenetic analyses. The pipeline can not only process various forms of proteomic data, but also easily harness genetic data in different formats (CRAM, BAM, VCF) and translate it, allowing the user to create reference panels for phyloproteomic analyses. We describe the various steps of the pipeline and its many functionalities, and provide some examples of how to use it. PaleoProPhyler allows researchers with little bioinformatics experience to efficiently analyze palaeoproteomic sequences, so as to derive insights from this valuable source of evolutionary data.
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