1. Home
2. Sections
3. Genomics

Genomics

• 

  MacSyFinder v2: Improved modelling and search engine to identify molecular systems in genomes

  Néron, Bertrand; Denise, Rémi; Coluzzi, Charles; Touchon, Marie; Rocha, Eduardo P.C.; Abby, Sophie S.

  10.24072/pcjournal.250 - Peer Community Journal, Volume 3 (2023), article no. e28.

  Get full text PDF
• 

  Performance and limitations of linkage-disequilibrium-based methods for inferring the genomic landscape of recombination and detecting hotspots: a simulation study

  Raynaud, Marie; Gagnaire, Pierre-Alexandre; Galtier, Nicolas

  10.24072/pcjournal.254 - Peer Community Journal, Volume 3 (2023), article no. e27.

  Get full text PDF
• 

  RAREFAN: A webservice to identify REPINs and RAYTs in bacterial genomes

  Fortmann-Grote, Carsten; Irmer, Julia von; Bertels, Frederic

  10.24072/pcjournal.244 - Peer Community Journal, Volume 3 (2023), article no. e19.

  Get full text PDF
• 

  Nucleosome patterns in four plant pathogenic fungi with contrasted genome structures

  Clairet, Colin; Lapalu, Nicolas; Simon, Adeline; Soyer, Jessica L.; Viaud, Muriel; Zehraoui, Enric; Dalmais, Berengère; Fudal, Isabelle; Ponts, Nadia

  10.24072/pcjournal.227 - Peer Community Journal, Volume 3 (2023), article no. e13.

  Get full text PDF
• 

  Phenotypic and transcriptomic analyses reveal major differences between apple and pear scab nonhost resistance

  Vergne, Emilie; Chevreau, Elisabeth; Ravon, Elisa; Gaillard, Sylvain; Pelletier, Sandra; Bahut, Muriel; Perchepied, Laure

  10.24072/pcjournal.225 - Peer Community Journal, Volume 3 (2023), article no. e9.

  Get full text PDF
• 

  Botrytis cinerea strains infecting grapevine and tomato display contrasted repertoires of accessory chromosomes, transposons and small RNAs

  Simon, Adeline; Mercier, Alex; Gladieux, Pierre; Poinssot, Benoît; Walker, Anne-Sophie; Viaud, Muriel

  10.24072/pcjournal.211 - Peer Community Journal, Volume 2 (2022), article no. e83.

  Get full text PDF
• 

  Somatic mutation detection: a critical evaluation through simulations and reanalyses in oaks

  Schmitt, Sylvain; Leroy, Thibault; Heuertz, Myriam; Tysklind, Niklas

  10.24072/pcjournal.187 - Peer Community Journal, Volume 2 (2022), article no. e68.

  Get full text PDF
• 

  MATEdb, a data repository of high-quality metazoan transcriptome assemblies to accelerate phylogenomic studies

  Fernández, Rosa; Tonzo, Vanina; Simón Guerrero, Carolina; Lozano-Fernandez, Jesus; Martínez-Redondo, Gemma I.; Balart-García, Pau; Aristide, Leandro; Eleftheriadi, Klara; Vargas-Chávez, Carlos

  10.24072/pcjournal.177 - Peer Community Journal, Volume 2 (2022), article no. e58.

  Get full text PDF
• 

  EukProt: A database of genome-scale predicted proteins across the diversity of eukaryotes

  Richter, Daniel J.; Berney, Cédric; Strassert, Jürgen F. H.; Poh, Yu-Ping; Herman, Emily K.; Muñoz-Gómez, Sergio A.; Wideman, Jeremy G.; Burki, Fabien; de Vargas, Colomban

  10.24072/pcjournal.173 - Peer Community Journal, Volume 2 (2022), article no. e56.

  Get full text PDF
• 

  CulebrONT: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes

  Orjuela, Julie; Comte, Aurore; Ravel, Sébastien; Charriat, Florian; Vi, Tram; Sabot, François ; Cunnac, Sébastien

  10.24072/pcjournal.153 - Peer Community Journal, Volume 2 (2022), article no. e46.

  Get full text PDF