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Genomics

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  EukProt: A database of genome-scale predicted proteins across the diversity of eukaryotes

  Richter, Daniel J.; Berney, Cédric; Strassert, Jürgen F. H.; Poh, Yu-Ping; Herman, Emily K.; Muñoz-Gómez, Sergio A.; Wideman, Jeremy G.; Burki, Fabien; de Vargas, Colomban

  10.24072/pcjournal.173 - Peer Community Journal, Volume 2 (2022), article no. e56.

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  CulebrONT: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes

  Orjuela, Julie; Comte, Aurore; Ravel, Sébastien; Charriat, Florian; Vi, Tram; Sabot, François ; Cunnac, Sébastien

  10.24072/pcjournal.153 - Peer Community Journal, Volume 2 (2022), article no. e46.

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  Karyorelict ciliates use an ambiguous genetic code with context-dependent stop/sense codons

  Seah, Brandon Kwee Boon; Singh, Aditi; Swart, Estienne Carl

  10.24072/pcjournal.141 - Peer Community Journal, Volume 2 (2022), article no. e42.

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  Chromosome-level genome assembly and annotation of two lineages of the ant Cataglyphis hispanica: stepping stones towards genomic studies of hybridogenesis and thermal adaptation in desert ants

  Darras, Hugo; De Souza Araujo, Natalia; Baudry, Lyam; Guiglielmoni, Nadège; Lorite, Pedro; Marbouty, Martial; Rodriguez, Fernando; Arkhipova, Irina; Koszul, Romain; Flot, Jean-François; Aron, Serge

  10.24072/pcjournal.140 - Peer Community Journal, Volume 2 (2022), article no. e40.

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  A deep dive into genome assemblies of non-vertebrate animals

  Guiglielmoni, Nadège; Rivera-Vicéns, Ramón; Koszul, Romain; Flot, Jean-François

  10.24072/pcjournal.128 - Peer Community Journal, Volume 2 (2022), article no. e29.

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  Chromosomal rearrangements with stable repertoires of genes and transposable elements in an invasive forest-pathogenic fungus

  Demené, Arthur; Laurent, Benoît; Cros-Arteil, Sandrine; Boury, Christophe; Dutech, Cyril

  10.24072/pcjournal.127 - Peer Community Journal, Volume 2 (2022), article no. e28.

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  Traces of transposable elements in genome dark matter co-opted by flowering gene regulation networks

  Baud, Agnès; Wan, Mariène; Nouaud, Danielle; Francillonne, Nicolas; Anxolabéhère, Dominique; Quesneville, Hadi

  10.24072/pcjournal.68 - Peer Community Journal, Volume 2 (2022), article no. e14.

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  Semi-artificial datasets as a resource for validation of bioinformatics pipelines for plant virus detection

  Tamisier, Lucie; Haegeman, Annelies; Foucart, Yoika; Fouillien, Nicolas; Al Rwahnih, Maher; Buzkan, Nihal; Candresse, Thierry; Chiumenti, Michela; De Jonghe, Kris; Lefebvre, Marie; Margaria, Paolo; Reynard, Jean Sébastien; Stevens, Kristian; Kutnjak, Denis; Massart, Sébastien

  10.24072/pcjournal.62 - Peer Community Journal, Volume 1 (2021), article no. e53.

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  Pipeline to detect the positional and directional relationship between transposable elements and adjacent genes in host genome

  Meguerditchian, Caroline; Ergun, Ayse; Decroocq, Veronique; Lefebvre, Marie; Bui, Quynh-Trang

  10.24072/pcjournal.57 - Peer Community Journal, Volume 1 (2021), article no. e48.

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  Gut microbial ecology of Xenopus tadpoles across life stages

  Scalvenzi, Thibault; Clavereau, Isabelle; Bourge, Mickaël; Pollet, Nicolas

  10.24072/pcjournal.53 - Peer Community Journal, Volume 1 (2021), article no. e41.

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