Genomics

Somatic mutation detection: a critical evaluation through simulations and reanalyses in oaks

Schmitt, Sylvain; Leroy, Thibault; Heuertz, Myriam; Tysklind, Niklas

10.24072/pcjournal.187 - Peer Community Journal, Volume 2 (2022), article no. e68.
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MATEdb, a data repository of high-quality metazoan transcriptome assemblies to accelerate phylogenomic studies

Fernández, Rosa; Tonzo, Vanina; Simón Guerrero, Carolina; Lozano-Fernandez, Jesus; Martínez-Redondo, Gemma I.; Balart-García, Pau; Aristide, Leandro; Eleftheriadi, Klara; Vargas-Chávez, Carlos

10.24072/pcjournal.177 - Peer Community Journal, Volume 2 (2022), article no. e58.
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EukProt: A database of genome-scale predicted proteins across the diversity of eukaryotes

Richter, Daniel J.; Berney, Cédric; Strassert, Jürgen F. H.; Poh, Yu-Ping; Herman, Emily K.; Muñoz-Gómez, Sergio A.; Wideman, Jeremy G.; Burki, Fabien; de Vargas, Colomban

10.24072/pcjournal.173 - Peer Community Journal, Volume 2 (2022), article no. e56.
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CulebrONT: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes

Orjuela, Julie; Comte, Aurore; Ravel, Sébastien; Charriat, Florian; Vi, Tram; Sabot, François ; Cunnac, Sébastien

10.24072/pcjournal.153 - Peer Community Journal, Volume 2 (2022), article no. e46.
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Karyorelict ciliates use an ambiguous genetic code with context-dependent stop/sense codons

Seah, Brandon Kwee Boon; Singh, Aditi; Swart, Estienne Carl

10.24072/pcjournal.141 - Peer Community Journal, Volume 2 (2022), article no. e42.
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Chromosome-level genome assembly and annotation of two lineages of the ant Cataglyphis hispanica: stepping stones towards genomic studies of hybridogenesis and thermal adaptation in desert ants

Darras, Hugo; De Souza Araujo, Natalia; Baudry, Lyam; Guiglielmoni, Nadège; Lorite, Pedro; Marbouty, Martial; Rodriguez, Fernando; Arkhipova, Irina; Koszul, Romain; Flot, Jean-François; Aron, Serge

10.24072/pcjournal.140 - Peer Community Journal, Volume 2 (2022), article no. e40.
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A deep dive into genome assemblies of non-vertebrate animals

Guiglielmoni, Nadège; Rivera-Vicéns, Ramón; Koszul, Romain; Flot, Jean-François

10.24072/pcjournal.128 - Peer Community Journal, Volume 2 (2022), article no. e29.
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Chromosomal rearrangements with stable repertoires of genes and transposable elements in an invasive forest-pathogenic fungus

Demené, Arthur; Laurent, Benoît; Cros-Arteil, Sandrine; Boury, Christophe; Dutech, Cyril

10.24072/pcjournal.127 - Peer Community Journal, Volume 2 (2022), article no. e28.
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Traces of transposable elements in genome dark matter co-opted by flowering gene regulation networks

Baud, Agnès; Wan, Mariène; Nouaud, Danielle; Francillonne, Nicolas; Anxolabéhère, Dominique; Quesneville, Hadi

10.24072/pcjournal.68 - Peer Community Journal, Volume 2 (2022), article no. e14.
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Semi-artificial datasets as a resource for validation of bioinformatics pipelines for plant virus detection

Tamisier, Lucie; Haegeman, Annelies; Foucart, Yoika; Fouillien, Nicolas; Al Rwahnih, Maher; Buzkan, Nihal; Candresse, Thierry; Chiumenti, Michela; De Jonghe, Kris; Lefebvre, Marie; Margaria, Paolo; Reynard, Jean Sébastien; Stevens, Kristian; Kutnjak, Denis; Massart, Sébastien

10.24072/pcjournal.62 - Peer Community Journal, Volume 1 (2021), article no. e53.
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