Genomics

Expression of cell-wall related genes is highly variable and correlates with sepal morphology

Hartasánchez, Diego A.; Kiss, Annamaria; Battu, Virginie; Soraru, Charline; Delgado-Vaquera, Abigail; Massinon, Florian; Brasó-Vives, Marina; Mollier, Corentin; Martin-Magniette, Marie-Laure; Boudaoud, Arezki; Monéger, Françoise

10.24072/pcjournal.327 - Peer Community Journal, Volume 3 (2023), article no. e93.
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The demographic history of the wild crop relative Brachypodium distachyon is shaped by distinct past and present ecological niches

Minadakis, Nikolaos; Williams, Hefin; Horvath, Robert; Caković, Danka; Stritt, Christoph; Thieme, Michael; Bourgeois, Yann; Roulin, Anne C.

10.24072/pcjournal.319 - Peer Community Journal, Volume 3 (2023), article no. e84.
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Efficient k-mer based curation of raw sequence data: application in Drosophila suzukii

Gautier, Mathieu

10.24072/pcjournal.309 - Peer Community Journal, Volume 3 (2023), article no. e79.
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Genomic data suggest parallel dental vestigialization within the xenarthran radiation

Emerling, Christopher A; Gibb, Gillian C; Tilak, Marie-Ka; Hughes, Jonathan J; Kuch, Melanie; Duggan, Ana T; Poinar, Hendrik N; Nachman, Michael W; Delsuc, Frédéric

10.24072/pcjournal.303 - Peer Community Journal, Volume 3 (2023), article no. e75.
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Near-chromosome level genome assembly of devil firefish, Pterois miles

Kitsoulis, Christos V.; Papadogiannis, Vasileios; Kristoffersen, Jon B.; Kaitetzidou, Elisavet; Sterioti, Aspasia; Tsigenopoulos, Costas S.; Manousaki, Tereza

10.24072/pcjournal.295 - Peer Community Journal, Volume 3 (2023), article no. e64.
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MacSyFinder v2: Improved modelling and search engine to identify molecular systems in genomes

Néron, Bertrand; Denise, Rémi; Coluzzi, Charles; Touchon, Marie; Rocha, Eduardo P.C.; Abby, Sophie S.

10.24072/pcjournal.250 - Peer Community Journal, Volume 3 (2023), article no. e28.
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Performance and limitations of linkage-disequilibrium-based methods for inferring the genomic landscape of recombination and detecting hotspots: a simulation study

Raynaud, Marie; Gagnaire, Pierre-Alexandre; Galtier, Nicolas

10.24072/pcjournal.254 - Peer Community Journal, Volume 3 (2023), article no. e27.
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RAREFAN: A webservice to identify REPINs and RAYTs in bacterial genomes

Fortmann-Grote, Carsten; Irmer, Julia von; Bertels, Frederic

10.24072/pcjournal.244 - Peer Community Journal, Volume 3 (2023), article no. e19.
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Nucleosome patterns in four plant pathogenic fungi with contrasted genome structures

Clairet, Colin; Lapalu, Nicolas; Simon, Adeline; Soyer, Jessica L.; Viaud, Muriel; Zehraoui, Enric; Dalmais, Berengère; Fudal, Isabelle; Ponts, Nadia

10.24072/pcjournal.227 - Peer Community Journal, Volume 3 (2023), article no. e13.
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Phenotypic and transcriptomic analyses reveal major differences between apple and pear scab nonhost resistance

Vergne, Emilie; Chevreau, Elisabeth; Ravon, Elisa; Gaillard, Sylvain; Pelletier, Sandra; Bahut, Muriel; Perchepied, Laure

10.24072/pcjournal.225 - Peer Community Journal, Volume 3 (2023), article no. e9.
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