Mathematical & Computational Biology
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Section: Mathematical & Computational Biology ; Topics: Genetics/genomics, Computer sciences
Revisiting pangenome openness with k-mers
10.24072/pcjournal.415 - Peer Community Journal, Volume 4 (2024), article no. e47.
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Section: Mathematical & Computational Biology ; Topics: Agricultural sciences, Ecology, Computer sciences
A workflow for processing global datasets: application to intercropping
10.24072/pcjournal.389 - Peer Community Journal, Volume 4 (2024), article no. e24.
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Section: Mathematical & Computational Biology ; Topics: Population biology, Applied mathematics, Statistics
A mechanistic-statistical approach to infer dispersal and demography from invasion dynamics, applied to a plant pathogen
Saubin, Méline;
Coville, Jérome;
Xhaard, Constance;
Frey, Pascal;
Soubeyrand, Samuel;
Halkett, Fabien;
Fabre, Frédéric
10.24072/pcjournal.356 - Peer Community Journal, Volume 4 (2024), article no. e9.
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Section: Mathematical & Computational Biology ; Topics: Biophysics and computational biology, Evolution, Genetics/Genomics
An approximate likelihood method reveals ancient gene flow between human, chimpanzee and gorilla
10.24072/pcjournal.359 - Peer Community Journal, Volume 4 (2024), article no. e3.
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Section: Mathematical & Computational Biology ; Topics: Genetics/Genomics, Applied mathematics
General encoding of canonical k-mers
10.24072/pcjournal.323 - Peer Community Journal, Volume 3 (2023), article no. e87.
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Section: Mathematical & Computational Biology ; Topics: Biophysics and computational biology, Genetics/Genomics, Health sciences
Cancer phylogenetic tree inference at scale from 1000s of single cell genomes
Salehi, Sohrab; Dorri, Fatemeh; Chern, Kevin; Kabeer, Farhia;
Rusk, Nicole;
Funnell, Tyler;
Williams, Marc J.;
Lai, Daniel;
Andronescu, Mirela;
Campbell, Kieran R.;
McPherson, Andrew;
Aparicio, Samuel;
Roth, Andrew;
Shah, Sohrab P.;
Bouchard-Côté, Alexandre
10.24072/pcjournal.292 - Peer Community Journal, Volume 3 (2023), article no. e63.
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Section: Mathematical & Computational Biology ; Topics: Biophysics and computational biology, Genetics/Genomics, Population biology
Population genetics: coalescence rate and demographic parameters inference
10.24072/pcjournal.285 - Peer Community Journal, Volume 3 (2023), article no. e53.
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Section: Mathematical & Computational Biology ; Topics: Biophysics and computational biology, Genetics/Genomics
Marker and source-marker reprogramming of Most Permissive Boolean networks and ensembles with BoNesis
10.24072/pcjournal.255 - Peer Community Journal, Volume 3 (2023), article no. e30.
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Section: Mathematical & Computational Biology ; Topics: Biophysics and computational biology, Genetics/Genomics
HMMploidy: inference of ploidy levels from short-read sequencing data
Soraggi, Samuele;
Rhodes, Johanna;
Altinkaya, Isin;
Tarrant, Oliver;
Balloux, Francois;
Fisher, Matthew C;
Fumagalli, Matteo
10.24072/pcjournal.178 - Peer Community Journal, Volume 2 (2022), article no. e60.
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Section: Mathematical & Computational Biology ; Topics: Biophysics and computational biology, Genetics/Genomics, Evolution
An efficient algorithm for estimating population history from genetic data
10.24072/pcjournal.132 - Peer Community Journal, Volume 2 (2022), article no. e32.
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