Genomics

A deep dive into genome assemblies of non-vertebrate animals

10.24072/pcjournal.128 - Peer Community Journal, Volume 2 (2022), article no. e29.

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Non-vertebrate species represent about 95% of known metazoan (animal) diversity. They remain to this day relatively unexplored genetically, but understanding their genome structure and function is pivotal for expanding our current knowledge of evolution, ecology and biodiversity. Following the continuous improvements and decreasing costs of sequencing technologies, many genome assembly tools have been released, leading to a significant amount of genome projects being completed in recent years. In this review, we examine the current state of genome projects of non-vertebrate animal species. We present an overview of available sequencing technologies, assembly approaches, as well as pre and post-processing steps, genome assembly evaluation methods, and their application to non-vertebrate animal genomes.

Published online:
DOI: 10.24072/pcjournal.128
Guiglielmoni, Nadège 1, 2; Rivera-Vicéns, Ramón 3; Koszul, Romain 4; Flot, Jean-François 2, 5

1 Institut für Zoologie, Universität zu Köln, 50674 Cologne, Germany
2 Service Evolution Biologique et Ecologie, Université libre de Bruxelles (ULB), 1050 Brussels, Belgium
3 Department of Earth and Environmental Sciences, Paleontology & Geobiology, Ludwig-Maximilians-Universität München, 80333 Munich, Germany
4 Institut Pasteur, Unité Régulation Spatiale des Génomes, UMR 3525, CNRS, 75015 Paris, France
5 Interuniversity Institute of Bioinformatics in Brussels – (IB)², 1050 Brussels, Belgium
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Guiglielmoni, Nadège; Rivera-Vicéns, Ramón; Koszul, Romain; Flot, Jean-François. A deep dive into genome assemblies of non-vertebrate animals. Peer Community Journal, Volume 2 (2022), article  no. e29. doi : 10.24072/pcjournal.128. https://peercommunityjournal.org/articles/10.24072/pcjournal.128/

Peer reviewed and recommended by PCI : 10.24072/pci.genomics.100016

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