A deep dive into genome assemblies of non-vertebrate animals

Guiglielmoni, Nadège; Rivera-Vicéns, Ramón; Koszul, Romain; Flot, Jean-François

doi:10.24072/pcjournal.128

Section: Genomics
Topic: Genetics/Genomics

A deep dive into genome assemblies of non-vertebrate animals

Guiglielmoni, Nadège ^1,² ; Rivera-Vicéns, Ramón ³ ; Koszul, Romain ⁴ ; Flot, Jean-François ^1,⁵

¹ Service Evolution Biologique et Ecologie, Université libre de Bruxelles (ULB), 1050 Brussels, Belgium
² Institut für Zoologie, Universität zu Köln, 50674 Cologne, Germany
³ Department of Earth and Environmental Sciences, Paleontology & Geobiology, Ludwig-Maximilians-Universität München, 80333 Munich, Germany
⁴ Institut Pasteur, Unité Régulation Spatiale des Génomes, UMR 3525, CNRS, 75015 Paris, France
⁵ Interuniversity Institute of Bioinformatics in Brussels – (IB)², 1050 Brussels, Belgium

10.24072/pcjournal.128 - Peer Community Journal, Volume 2 (2022), article no. e29.

Get full text PDF Peer reviewed and recommended by PCI

Abstract

Non-vertebrate species represent about 95% of known metazoan (animal) diversity. They remain to this day relatively unexplored genetically, but understanding their genome structure and function is pivotal for expanding our current knowledge of evolution, ecology and biodiversity. Following the continuous improvements and decreasing costs of sequencing technologies, many genome assembly tools have been released, leading to a significant amount of genome projects being completed in recent years. In this review, we examine the current state of genome projects of non-vertebrate animal species. We present an overview of available sequencing technologies, assembly approaches, as well as pre and post-processing steps, genome assembly evaluation methods, and their application to non-vertebrate animal genomes.

Published online: 2022-05-16

DOI: 10.24072/pcjournal.128
Type: Review article

Author's affiliations:

Guiglielmoni, Nadège ^{1, 2}; Rivera-Vicéns, Ramón ³; Koszul, Romain ⁴; Flot, Jean-François ^{1, 5}

¹ Service Evolution Biologique et Ecologie, Université libre de Bruxelles (ULB), 1050 Brussels, Belgium
² Institut für Zoologie, Universität zu Köln, 50674 Cologne, Germany
³ Department of Earth and Environmental Sciences, Paleontology & Geobiology, Ludwig-Maximilians-Universität München, 80333 Munich, Germany
⁴ Institut Pasteur, Unité Régulation Spatiale des Génomes, UMR 3525, CNRS, 75015 Paris, France
⁵ Interuniversity Institute of Bioinformatics in Brussels – (IB)², 1050 Brussels, Belgium

License:

CC-BY 4.0

Copyrights: The authors retain unrestricted copyrights and publishing rights

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Guiglielmoni, Nadège; Rivera-Vicéns, Ramón; Koszul, Romain; Flot, Jean-François. A deep dive into genome assemblies of non-vertebrate animals. Peer Community Journal, Volume 2 (2022), article  no. e29. doi : 10.24072/pcjournal.128. https://peercommunityjournal.org/articles/10.24072/pcjournal.128/

Peer reviewed and recommended by PCI : 10.24072/pci.genomics.100016

Conflict of interest of the recommender and peer reviewers:
The recommender in charge of the evaluation of the article and the reviewers declared that they have no conflict of interest (as defined in the code of conduct of PCI) with the authors or with the content of the article.

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Section: Genomics Topic: Genetics/Genomics

A deep dive into genome assemblies of non-vertebrate animals

Section: Genomics
Topic: Genetics/Genomics