Genetics/genomics
Section: Mathematical & Computational Biology
Number of articles: 14
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Section: Mathematical & Computational Biology ; Topics: Evolution, Genetics/genomics, Population biology
SelNeTime: a python package inferring effective population size and selection intensity from genomic time series data
10.24072/pcjournal.708 - Peer Community Journal, Volume 6 (2026), article no. e46
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Section: Mathematical & Computational Biology ; Topics: Statistics, Biophysics and computational biology, Genetics/genomics
A new iterative framework for simulation-based population genetic inference with improved coverage properties of confidence intervals
10.24072/pcjournal.721 - Peer Community Journal, Volume 6 (2026), article no. e43
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Section: Mathematical & Computational Biology ; Topics: Evolution, Genetics/genomics, Microbiology
A systematic assessment of phylogenomic approaches for microbial species tree reconstruction
10.24072/pcjournal.579 - Peer Community Journal, Volume 5 (2025), article no. e72
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Section: Mathematical & Computational Biology ; Topics: Biophysics and computational biology, Genetics/genomics, Immunology and inflammation
Alignment-free detection and seed-based identification of multi-loci V(D)J recombinations in Vidjil-algo
10.24072/pcjournal.547 - Peer Community Journal, Volume 5 (2025), article no. e44
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Section: Mathematical & Computational Biology ; Topics: Evolution, Genetics/genomics
Genetic Evidence for Geographic Structure within the Neanderthal Population
10.24072/pcjournal.448 - Peer Community Journal, Volume 4 (2024), article no. e68
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Section: Mathematical & Computational Biology ; Topics: Genetics/genomics, Computer sciences
Revisiting pangenome openness with k-mers
10.24072/pcjournal.415 - Peer Community Journal, Volume 4 (2024), article no. e47
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Section: Mathematical & Computational Biology ; Topics: Biophysics and computational biology, Evolution, Genetics/genomics
An approximate likelihood method reveals ancient gene flow between human, chimpanzee and gorilla
10.24072/pcjournal.359 - Peer Community Journal, Volume 4 (2024), article no. e3
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Section: Mathematical & Computational Biology ; Topics: Genetics/genomics, Applied mathematics
General encoding of canonical k-mers
10.24072/pcjournal.323 - Peer Community Journal, Volume 3 (2023), article no. e87
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Section: Mathematical & Computational Biology ; Topics: Biophysics and computational biology, Genetics/genomics, Health sciences
Cancer phylogenetic tree inference at scale from 1000s of single cell genomes
Salehi, Sohrab; Dorri, Fatemeh; Chern, Kevin; Kabeer, Farhia;
Rusk, Nicole;
Funnell, Tyler;
Williams, Marc J.;
Lai, Daniel;
Andronescu, Mirela;
Campbell, Kieran R.;
McPherson, Andrew;
Aparicio, Samuel;
Roth, Andrew;
Shah, Sohrab P.;
Bouchard-Côté, Alexandre
10.24072/pcjournal.292 - Peer Community Journal, Volume 3 (2023), article no. e63
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Section: Mathematical & Computational Biology ; Topics: Biophysics and computational biology, Genetics/genomics, Population biology
Population genetics: coalescence rate and demographic parameters inference
10.24072/pcjournal.285 - Peer Community Journal, Volume 3 (2023), article no. e53
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