Table of Contents
Number of articles: 117
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Section: Ecology ; Topics: Ecology, Environmental sciences, Population biology
A dataset of Zostera marina and Zostera noltei structure and functioning in four sites along the French coast over a period of 18 months
Lacoste, Elise;
Ouisse, Vincent;
Desroy, Nicolas;
Allano, Lionel;
Auby, Isabelle;
Bajjouk, Touria;
Bourdier, Constance;
Caisey, Xavier;
De Casamajor, Marie-Noelle;
Cimiterra, Nicolas;
Cordier, Céline;
Curd, Amélia;
Derrien, Lauriane;
Droual, Gabin;
Dubois, Stanislas;
Foucault, Elodie;
Foveau, Aurélie;
Gaffet, Jean-Dominique;
Ganthy, Florian;
Gionaroli, Camille;
Ignacio-Cifre, Rachel;
Liabot, Pierre-Olivier;
Messiaen, Gregory;
Meteigner, Claire;
Monnier, Benjamin;
Van Paemelen, Robin;
Pasquier, Marine;
Rigouin, Loic;
Rollet, Claire;
Royer, Aurélien;
Soissons, Laura;
Tancray, Aurélien;
Blanchet-Aurigny, Aline
10.24072/pcjournal.504 - Peer Community Journal, Volume 4 (2024), article no. e117.
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Section: Health & Movement Sciences ; Topics: Health sciences
Structural Vulnerability Factors and Gestational Weight Gain: A Scoping Review on the Extent, Range, and Nature of the Literature
Labonté, Jocelyne M;
Dumas, Alex;
Clark, Emily;
Savard, Claudia;
Fournier, Karine;
O’Connor, Sarah;
Morisset, Anne-Sophie;
Fontaine-Bisson, Bénédicte
10.24072/pcjournal.502 - Peer Community Journal, Volume 4 (2024), article no. e116.
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Section: Evolutionary Biology ; Topics: Biophysics and computational biology, Evolution, Genetics/genomics
Faster model-based estimation of ancestry proportions
10.24072/pcjournal.503 - Peer Community Journal, Volume 4 (2024), article no. e115.
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Section: Genomics ; Topics: Biology of interactions, Ecology, Genetics/genomics
mbctools: A User-Friendly Metabarcoding and Cross-Platform Pipeline for Analyzing Multiple Amplicon Sequencing Data across a Large Diversity of Organisms
Barnabé, Christian;
Sempéré, Guilhem;
Manzanilla, Vincent;
Millan, Joel Moo;
Amblard-Rambert, Antoine;
Waleckx, Etienne
10.24072/pcjournal.501 - Peer Community Journal, Volume 4 (2024), article no. e114.
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Section: Microbiology ; Topics: Microbiology
The effect of dietary fish oil replacement by microalgae on the gilthead sea bream midgut bacterial microbiota
Katsoulis-Dimitriou, Stefanos;
Nikouli, Eleni;
Gkalogianni, Elli Zafeiria;
Karapanagiotidis, Ioannis T.;
Kormas, Konstantinos A.
10.24072/pcjournal.498 - Peer Community Journal, Volume 4 (2024), article no. e113.
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Section: Ecology ; Topics: Ecology, Environmental sciences
Disentangling the effects of eutrophication and natural variability on macrobenthic communities across French coastal lagoons
Jones, Auriane G.;
Schaal, Gauthier;
Boyé, Aurélien;
Creemers, Marie;
Derolez, Valérie;
Desroy, Nicolas;
Fiandrino, Annie;
Mouton, Théophile L.;
Simier, Monique;
Smith, Niamh;
Ouisse, Vincent
10.24072/pcjournal.499 - Peer Community Journal, Volume 4 (2024), article no. e112.
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Section: Ecology ; Topics: Ecology, Population biology, Statistics ; Conference: Euring 2023
Large-scale spatio-temporal variation in vital rates and population dynamics of an alpine bird
10.24072/pcjournal.494 - Peer Community Journal, Volume 4 (2024), article no. e111.
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Section: Evolutionary Biology ; Topics: Ecology, Evolution, Genetics/genomics
A genomic duplication spanning multiple P450s contributes to insecticide resistance in the dengue mosquito Aedes aegypti
Bacot, Tiphaine; Haberkorn, Chloe;
Guilliet, Joseph;
Cattel, Julien;
Kefi, Mary;
Nadalin, Louis;
Filee, Jonathan;
Boyer, Frederic;
Gaude, Thierry;
Laporte, Frederic;
Tutagata, Jordan;
Vontas, John;
Dusfour, Isabelle;
Bonneville, Jean-Marc;
David, Jean-Philippe
10.24072/pcjournal.497 - Peer Community Journal, Volume 4 (2024), article no. e110.
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Section: Genomics ; Topics: Genetics/genomics
Re-annotation of SARS-CoV-2 proteins using an HHpred-based approach opens new opportunities for a better understanding of this virus
10.24072/pcjournal.496 - Peer Community Journal, Volume 4 (2024), article no. e109.
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Section: Genomics ; Topics: Genetics/genomics
Chromosome-level genome reference of the Caucasian dwarf goby Knipowitschia cf. caucasica, a new alien Gobiidae invading the River Rhine
Schoenle, Alexandra;
Guiglielmoni, Nadège;
Mainz, Tobias;
Greve, Carola;
Hamadou, Alexander Ben;
Heermann, Lisa;
Borcherding, Jost;
Waldvogel, Ann-Marie
10.24072/pcjournal.490 - Peer Community Journal, Volume 4 (2024), article no. e108.
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Section: Mathematical & Computational Biology ; Topics: Archaeology, Biochemistry, Biophysics and computational biology
Benchmarking the identification of a single degraded protein to explore optimal search strategies for ancient proteins
Rodriguez Palomo, Ismael;
Nair, Bharath;
Chiang, Yun;
Dekker, Joannes;
Dartigues, Benjamin;
Mackie, Meaghan;
Evans, Miranda;
Macleod, Ruairidh;
Olsen, Jesper V.;
Collins, Matthew J.
10.24072/pcjournal.491 - Peer Community Journal, Volume 4 (2024), article no. e107.
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Section: Evolutionary Biology ; Topics: Ecology, Evolution, Genetics/genomics
Cryptic species and hybridisation in corals: challenges and opportunities for conservation and restoration
Riginos, Cynthia;
Popovic, Iva;
Meziere, Zoe;
Garcia, Vhon;
Byrne, Ilha;
Howitt, Samantha M.;
Ishida, Hisatake;
Bairos-Novak, Kevin;
Humanes, Adriana;
Scharfenstein, Hugo;
Richards, Thomas;
Briggs, Ethan;
Clark, Vanessa;
Lei, Chuan;
Khan, Mariam;
Prata, Katharine E.
10.24072/pcjournal.492 - Peer Community Journal, Volume 4 (2024), article no. e106.
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Section: Animal Science ; Topics: Agricultural sciences, Applied biological sciences, Applied mathematics
From data on gross activity to the characterization of animal behaviour: which metrics for which purposes?
van Dixhoorn, Ingrid;
Aubé, Lydiane ;
van Zyl, Coenraad;
de Mol, Rudi;
van der Werf, Joop;
Lardy, Romain ;
Mialon, Marie-Madeleine ;
van Reenen, Kees;
Veissier, Isabelle
10.24072/pcjournal.489 - Peer Community Journal, Volume 4 (2024), article no. e105.
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Section: Network Science ; Topics: Ecology, Environmental sciences, Computer sciences
A single changing hypernetwork to represent (social-)ecological dynamics
10.24072/pcjournal.482 - Peer Community Journal, Volume 4 (2024), article no. e104.
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Section: Zoology ; Topics: Agricultural sciences, Ecology, Genetics/genomics
Cross-transmission of resistant gastrointestinal nematodes between wildlife and transhumant sheep
10.24072/pcjournal.477 - Peer Community Journal, Volume 4 (2024), article no. e103.
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Section: Mathematical & Computational Biology ; Topics: Biophysics and computational biology, Microbiology, Systems biology
In silico identification of switching nodes in metabolic networks
10.24072/pcjournal.480 - Peer Community Journal, Volume 4 (2024), article no. e102.
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Section: Evolutionary Biology ; Topics: Evolution, Genetics/genomics, Population biology
The impact of social complexity on the efficacy of natural selection in termites
10.24072/pcjournal.476 - Peer Community Journal, Volume 4 (2024), article no. e101.
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Section: Ecotoxicology & Environmental Chemistry ; Topics: Agricultural sciences, Ecology, Statistics
Identifying pesticide mixtures at country-wide scale
10.24072/pcjournal.472 - Peer Community Journal, Volume 4 (2024), article no. e100.
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Section: Genomics ; Topics: Agricultural sciences, Genetics/genomics, Population biology
Trends in genome diversity of small populations under a conservation program: a case study of two French chicken breeds
Bortoluzzi, Chiara;
Restoux, Gwendal;
Rouger, Romuald;
Desnoues, Benoit;
Petitjean, Florence;
Bosse, Mirte;
Tixier-Boichard, Michèle
10.24072/pcjournal.474 - Peer Community Journal, Volume 4 (2024), article no. e99.
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Section: Ecology ; Topics: Ecology
Body mass change over winter is consistently sex-specific across roe deer (Capreolus capreolus) populations
Hewison, A.J. Mark;
Bonnot, Nadège C.;
Gaillard, Jean-Michel;
Kjellander, Petter;
Lemaitre, Jean-François;
Morellet, Nicolas;
Pellerin, Maryline
10.24072/pcjournal.479 - Peer Community Journal, Volume 4 (2024), article no. e98.
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Section: Ecology ; Topics: Ecology, Environmental sciences
InsectChange: Comment
10.24072/pcjournal.469 - Peer Community Journal, Volume 4 (2024), article no. e97.
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Section: Mathematical & Computational Biology ; Topics: Biophysics and computational biology
HairSplitter: haplotype assembly from long, noisy reads
10.24072/pcjournal.481 - Peer Community Journal, Volume 4 (2024), article no. e96.
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Section: Ecology ; Topics: Biophysics and computational biology, Ecology, Statistics
Easy, fast and reproducible Stochastic Cellular Automata with chouca
Génin, Alexandre;
Dupont, Guillaume;
Valencia, Daniel;
Zucconi, Mauro;
Ávila-Thieme, M. Isidora;
Navarrete, Sergio A.;
Wieters, Evie A.
10.24072/pcjournal.466 - Peer Community Journal, Volume 4 (2024), article no. e95.
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Section: Animal Science ; Topics: Agricultural sciences
Goats who stare at video screens – assessing behavioural responses of goats towards images of familiar and unfamiliar con- and heterospecifics
10.24072/pcjournal.473 - Peer Community Journal, Volume 4 (2024), article no. e94.
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Section: Ecology ; Topics: Biophysics and computational biology, Ecology
Predicting species distributions in the open ocean with convolutional neural networks
10.24072/pcjournal.471 - Peer Community Journal, Volume 4 (2024), article no. e93.
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Section: Animal Science ; Topics: Genetics/genomics
Cost-efficient assignment panel for ducks. Setup of a cost-efficient assignment panel for duck populations.
Chapuis, Hervé;
Brard-Fudulea, Sophie;
Hazard, Azélie;
Vignal, Alain;
Demars, Julie;
Rouger, Romuald;
Teissier, Marc;
Gilbert, Hélène
10.24072/pcjournal.475 - Peer Community Journal, Volume 4 (2024), article no. e92.
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Section: Genomics ; Topics: Genetics/genomics, Microbiology
A Comprehensive Resource for Exploring Antiphage Defense: DefenseFinder Webservice,Wiki and Databases
Tesson, Florian;
Planel, Rémi;
Egorov, Artyom A;
Georjon, Héloïse;
Vaysset, Hugo;
Brancotte, Bryan;
Néron, Bertrand;
Mordret, Ernest;
Atkinson, Gemma Catherine;
Bernheim, Aude;
Cury, Jean
10.24072/pcjournal.470 - Peer Community Journal, Volume 4 (2024), article no. e91.
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Section: Paleontology ; Topics: Archaeology, Ecology, Paleontology
Introducing ‘trident’: a graphical interface for discriminating groups using dental microwear texture analysis
Thiery, Ghislain;
Francisco, Arthur;
Louail, Margot;
Berlioz, Emilie;
Blondel, Cécile;
Brunetière, Noël;
Ramdarshan, Anusha;
Walker, Axelle EC;
Merceron, Gildas
10.24072/pcjournal.467 - Peer Community Journal, Volume 4 (2024), article no. e90.
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Section: Genomics ; Topics: Evolution, Genetics/genomics
Identification and quantification of transposable element transcripts using Long-Read RNA-seq in Drosophila germline tissues
Rebollo, Rita;
Gerenton, Pierre;
Cumunel, Eric;
Mary, Arnaud;
Sabot, François;
Burlet, Nelly;
Gillet, Benjamin;
Hughes, Sandrine;
S. Oliveira, Daniel;
Goubert, Clément;
Fablet, Marie;
Vieira, Cristina;
Lacroix, Vincent
10.24072/pcjournal.457 - Peer Community Journal, Volume 4 (2024), article no. e89.
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Section: Ecology ; Topics: Ecology, Evolution, Psychological and cognitive sciences
Bayesian reinforcement learning models reveal how great-tailed grackles improve their behavioral flexibility in serial reversal learning experiments
Lukas, Dieter;
McCune, Kelsey;
Blaisdell, Aaron;
Johnson-Ulrich, Zoe;
MacPherson, Maggie;
Seitz, Benjamin;
Sevchik, August;
Logan, Corina
10.24072/pcjournal.456 - Peer Community Journal, Volume 4 (2024), article no. e88.
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Section: Ecology ; Topics: Ecology
Flexible reproductive seasonality in Africa-dwelling papionins is associated with low environmental productivity and high climatic unpredictability
Dezeure, Jules;
Dagorrette, Julie;
Burtschell, Lugdiwine;
Chowdhury, Shahrina;
Lukas, Dieter;
Swedell, Larissa;
Huchard, Elise
10.24072/pcjournal.464 - Peer Community Journal, Volume 4 (2024), article no. e87.
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Section: Mathematical & Computational Biology ; Topics: Ecology, Applied mathematics
Impact of a block structure on the Lotka-Volterra model
10.24072/pcjournal.460 - Peer Community Journal, Volume 4 (2024), article no. e86.
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Section: Animal Science ; Topics: Agricultural sciences
Diversity of performance patterns in dairy goats: multi-scale analysis of the lactation curves of milk yield, body condition score and body weight
10.24072/pcjournal.449 - Peer Community Journal, Volume 4 (2024), article no. e85.
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Section: Infections ; Topics: Genetics/genomics, Immunology and inflammation, Health sciences
Spatial and temporal epidemiology of SARS-CoV-2 virus lineages in Teesside, UK, in 2020: effects of socio-economic deprivation, weather, and lockdown on lineage dynamics
Moss, E.D.;
Rushton, S.P.;
Baker, P.;
Bashton, M.;
Crown, M.R.;
dos Santos, R.N.;
Nelson, A.;
O’Brien, S.J.;
Richards, Z.;
Sanderson, R.A.;
Yew, W.C.;
Young, G.R.;
McCann, C.M.;
Smith, D.L.
10.24072/pcjournal.461 - Peer Community Journal, Volume 4 (2024), article no. e84.
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Section: Ecology ; Topics: Biology of interactions, Ecology
Urban Cepaea nemoralis snails are less likely to have nematodes trapped within their shells
10.24072/pcjournal.463 - Peer Community Journal, Volume 4 (2024), article no. e83.
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Section: Evolutionary Biology ; Topics: Evolution, Plant biology, Population biology
Reproductive modes in populations of late-acting self-incompatible and self-compatible polyploid Ludwigia grandiflora subsp. hexapetala in western Europe
Stoeckel, Solenn;
Becheler, Ronan;
Portillo-Lemus, Luis;
Harang, Marilyne;
Besnard, Anne-Laure;
Lassalle, Gilles;
Causse-Védrines, Romain;
Michon-Coudouel, Sophie;
Park, Daniel J.;
Pope, Bernard J.;
Petit, Eric J.;
Barloy, Dominique
10.24072/pcjournal.458 - Peer Community Journal, Volume 4 (2024), article no. e82.
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Section: Archaeology ; Topics: Archaeology
Palaeoproteomic identification of a whale bone tool from Bronze Age Heiloo, the Netherlands
Dekker, Joannes A. A.;
Mylopotamitaki, Dorothea;
Verbaas, Annemieke;
Sinet-Mathiot, Virginie;
Presslee, Samantha;
McCarthy, Morgan L.;
Olsen, Morten Tange;
Olsen, Jesper V.;
van den Hurk, Youri;
Brattinga, Joris;
Welker, Frido
10.24072/pcjournal.451 - Peer Community Journal, Volume 4 (2024), article no. e81.
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Section: Ecology ; Topics: Biophysics and computational biology, Ecology, Environmental sciences
Reconstructing prevalence dynamics of wildlife pathogens from pooled and individual samples
Borremans, Benny;
Falvo, Caylee A;
Crowley, Daniel E;
Hoegh, Andrew;
Lloyd-Smith, James O;
Peel, Alison J;
Restif, Olivier;
Ruiz-Aravena, Manuel;
Plowright, Raina K
10.24072/pcjournal.455 - Peer Community Journal, Volume 4 (2024), article no. e80.
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Section: Mathematical & Computational Biology ; Topics: Biophysics and computational biology, Applied mathematics
Phenotype control and elimination of variables in Boolean networks
10.24072/pcjournal.452 - Peer Community Journal, Volume 4 (2024), article no. e79.
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Section: Health & Movement Sciences ; Topics: Psychological and cognitive sciences
On the specifics of valuing effort: a developmental and a formalized perspective on preferences for cognitive and physical effort
10.24072/pcjournal.444 - Peer Community Journal, Volume 4 (2024), article no. e78.
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Section: Organization Studies ; Topics: Sociology
A qualitative and multicriteria assessment of scientists: a perspective based on a case study of INRAE, France
10.24072/pcjournal.432 - Peer Community Journal, Volume 4 (2024), article no. e77.
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Section: Ecology ; Topics: Ecology, Population biology, Statistics
Efficient sampling designs to assess biodiversity spatial autocorrelation: should we go fractal?
10.24072/pcjournal.454 - Peer Community Journal, Volume 4 (2024), article no. e76.
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Section: Evolutionary Biology ; Topics: Ecology, Evolution, Genetics/genomics
Exploring the effects of ecological parameters on the spatial structure of genetic tree sequences
10.24072/pcjournal.439 - Peer Community Journal, Volume 4 (2024), article no. e75.
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Section: Ecotoxicology & Environmental Chemistry ; Topics: Ecology, Environmental sciences, Physiology
Molecular response to multiple trace element contamination of the European sardine
Beauvieux, Anaïs;
Fromentin, Jean-Marc;
Saraux, Claire;
Romero, Diego;
Couffin, Nathan;
Brown, Adrien;
Metral, Luisa;
Bertile, Fabrice;
Schull, Quentin
10.24072/pcjournal.450 - Peer Community Journal, Volume 4 (2024), article no. e74.
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Section: Infections ; Topics: Ecology, Genetics/genomics, Microbiology
Diverse fox circovirus (Circovirus canine) variants circulate at high prevalence in grey wolves (Canis lupus) from the Northwest Territories, Canada
Canuti, Marta;
King, Abigail V.L.;
Franzo, Giovanni;
Cluff, H. Dean;
Larsen, Lars E.;
Fenton, Heather;
Dufour, Suzanne C.;
Lang, Andrew S.
10.24072/pcjournal.443 - Peer Community Journal, Volume 4 (2024), article no. e73.
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Section: Genomics ; Topics: Biology of interactions, Genetics/genomics, Plant biology
High quality genome assembly and annotation (v1) of the eukaryotic terrestrial microalga Coccomyxa viridis SAG 216-4
Kraege, Anton;
Chavarro-Carrero, Edgar A.;
Guiglielmoni, Nadège;
Schnell, Eva;
Kirangwa, Joseph;
Heilmann-Heimbach, Stefanie;
Becker, Kerstin;
Köhrer, Karl;
Schiffer, Philipp;
Thomma, Bart P. H. J.;
Rovenich, Hanna
10.24072/pcjournal.447 - Peer Community Journal, Volume 4 (2024), article no. e72.
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Section: Ecology ; Topics: Ecology
The large and central Caligo martia eyespot may reduce fatal attacks by birds: a case study supports the deflection hypothesis in nature
Iserhard, Cristiano Agra;
Malta, Shimene;
Penz, Carla;
Fraga, Brenda Barbon;
Costa, Camila Abel;
Schwantz, Taiane;
Bordin, Kauane Maiara
10.24072/pcjournal.442 - Peer Community Journal, Volume 4 (2024), article no. e71.
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Section: Zoology ; Topics: Evolution, Genetics/genomics
Museomics of Carabus giant ground beetles shows an Oligocene origin and in situ alpine diversification
Pauli, Marie T.;
Gauthier, Jérémy;
Labédan, Marjorie;
Blanc, Mickael;
Bilat, Julia;
Toussaint, Emmanuel F. A.
10.24072/pcjournal.445 - Peer Community Journal, Volume 4 (2024), article no. e70.
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Section: Ecology ; Topics: Ecology, Environmental sciences
Effects of water nutrient concentrations on stream macroinvertebrate community stoichiometry: a large-scale study
Beck, Miriam;
Billoir, Elise;
Usseglio-Polatera, Philippe;
Meyer, Albin;
Gautreau, Edwige;
Danger, Michael
10.24072/pcjournal.441 - Peer Community Journal, Volume 4 (2024), article no. e69.
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Section: Mathematical & Computational Biology ; Topics: Evolution, Genetics/genomics
Genetic Evidence for Geographic Structure within the Neanderthal Population
10.24072/pcjournal.448 - Peer Community Journal, Volume 4 (2024), article no. e68.
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Section: Microbiology ; Topics: Ecology, Microbiology
Microbiome turnover during offspring development varies with maternal care, but not moult, in a hemimetabolous insect
10.24072/pcjournal.446 - Peer Community Journal, Volume 4 (2024), article no. e67.
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Section: Ecotoxicology & Environmental Chemistry ; Topics: Environmental sciences
Ecotoxicity of lanthanides to Daphnia magna: insights from elemental behavior and speciation in a standardized test medium
Vignati, Davide A.L.;
Martin, Loïc A.;
Poirier, Laurence;
Zalouk-Vergnoux, Aurore;
Fouque, Chantal;
Bojic, Clément;
Hissler, Christophe;
Cossu-Leguille, Carole
10.24072/pcjournal.440 - Peer Community Journal, Volume 4 (2024), article no. e66.
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Section: Ecology ; Topics: Ecology, Demography, Statistics
Hierarchizing multi-scale environmental effects on agricultural pest population dynamics: a case study on the annual onset of Bactrocera dorsalis population growth in Senegalese orchards
Caumette, Cécile; Diatta, Paterne;
Piry, Sylvain;
Chapuis, Marie-Pierre;
Faye, Emile;
Sigrist, Fabio;
Martin, Olivier;
Papaïx, Julien;
Brévault, Thierry;
Berthier, Karine
10.24072/pcjournal.438 - Peer Community Journal, Volume 4 (2024), article no. e65.
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Section: Ecology ; Topics: Ecology
Spider mites collectively avoid plants with cadmium irrespective of their frequency or the presence of competitors
10.24072/pcjournal.435 - Peer Community Journal, Volume 4 (2024), article no. e64.
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Section: Genomics ; Topics: Genetics/genomics
T7 DNA polymerase treatment improves quantitative sequencing of both double-stranded and single-stranded DNA viruses
Billaud, Maud; Theodorou, Ilias; Lamy-Besnier, Quentin; Shah, Shiraz A.; Lecointe, François;
De Sordi, Luisa;
De Paepe, Marianne;
Petit, Marie-Agnès
10.24072/pcjournal.437 - Peer Community Journal, Volume 4 (2024), article no. e63.
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Section: Ecology ; Topics: Ecology, Population biology, Statistics ; Conference: Euring 2023
Accounting for observation biases associated with counts of young when estimating fecundity: case study on the arboreal-nesting red kite (Milvus milvus)
10.24072/pcjournal.436 - Peer Community Journal, Volume 4 (2024), article no. e62.
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Section: Infections ; Topics: Biology of interactions, Ecology, Evolution
Differences in specificity, development time and virulence between two acanthocephalan parasites, infecting two cryptic species of Gammarus fossarum
Bauer, Alexandre;
Develay Nguyen, Lucie;
Motreuil, Sébastien;
Teixeira, Maria;
Debrosse, Nelly;
Rigaud, Thierry
10.24072/pcjournal.434 - Peer Community Journal, Volume 4 (2024), article no. e61.
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Section: Ecology ; Topics: Ecology, Evolution
Attracting pollinators vs escaping herbivores: eco-evolutionary dynamics of plants confronted with an ecological trade-off
10.24072/pcjournal.433 - Peer Community Journal, Volume 4 (2024), article no. e60.
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Section: Microbiology ; Topics: Ecology, Genetics/genomics, Microbiology
The bacterial microbiome of symbiotic and menthol-bleached polyps of long-term aquarium-reared Galaxea fascicularis
10.24072/pcjournal.429 - Peer Community Journal, Volume 4 (2024), article no. e59.
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Section: Ecology ; Topics: Biology of interactions, Ecology, Computer sciences
Diagnosis of planktonic trophic network dynamics with sharp qualitative changes
Gaucherel, Cedric;
Fayolle, Stolian;
Savelli, Raphael;
Philippine, Olivier;
Pommereau, Franck;
Dupuy, Christine
10.24072/pcjournal.417 - Peer Community Journal, Volume 4 (2024), article no. e58.
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Section: Ecology ; Topics: Developmental biology, Ecology, Physiology
Sex differences in the relationship between maternal and foetal glucocorticoids in a free-ranging large mammal
Amin, Bawan;
Fishman, Ruth;
Quinn, Matthew;
Matas, Devorah;
Palme, Rupert;
Koren, Lee;
Ciuti, Simone
10.24072/pcjournal.431 - Peer Community Journal, Volume 4 (2024), article no. e57.
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Section: Infections ; Topics: Demography, Statistics, Health sciences
HIV self-testing positivity rate and linkage to confirmatory testing and care: a telephone survey in Côte d’Ivoire, Mali, and Senegal
Kra, Arsène Kouassi;
Fotso, Arlette Simo;
Rouveau, Nicolas;
Maheu-Giroux, Mathieu;
Boily, Marie-Claude;
Silhol, Romain;
d’Elbée, Marc;
Vautier, Anthony;
Larmarange, Joseph
10.24072/pcjournal.428 - Peer Community Journal, Volume 4 (2024), article no. e56.
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Section: Zoology ; Topics: Ecology, Evolution
Relationship between weapon size and six key behavioural and physiological traits in males of the European earwig
Blackwell, Samantha E M; Pasquier, Laura;
Dupont, Simon;
devers, Severine;
Lecureuil, Charlotte;
Meunier, Joël
10.24072/pcjournal.430 - Peer Community Journal, Volume 4 (2024), article no. e55.
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Section: Mathematical & Computational Biology ; Topics: Biophysics and computational biology, Computer sciences, Applied mathematics
When Three Trees Go to War
10.24072/pcjournal.419 - Peer Community Journal, Volume 4 (2024), article no. e54.
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Section: Ecology ; Topics: Biology of interactions, Ecology
Insights on the effect of mega-carcass abundance on the population dynamics of a facultative scavenger predator and its prey
Sidous, Mellina;
Cubaynes, Sarah;
Gimenez, Olivier;
Drouet-Hoguet, Nolwenn;
Dray, Stéphane;
Bollache, Loïc;
Madhlamoto, Daphine;
Ngwenya, Nobesuthu Adelaide;
Fritz, Hervé;
Valeix, Marion
10.24072/pcjournal.420 - Peer Community Journal, Volume 4 (2024), article no. e53.
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Section: Animal Science ; Topics: Applied biological sciences, Computer sciences, Health sciences
Pig herd management and infection transmission dynamics: a challenge for modellers
10.24072/pcjournal.403 - Peer Community Journal, Volume 4 (2024), article no. e52.
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Section: Ecotoxicology & Environmental Chemistry ; Topics: Environmental sciences, Physiology
Assimilation efficiencies and elimination rates of silver, cadmium and zinc accumulated by trophic pathway in Gammarus fossarum
Gestin, Ophélia;
Lopes, Christelle;
Delorme, Nicolas;
Garnero, Laura;
Geffard, Olivier;
Lacoue-Labarthe, Thomas
10.24072/pcjournal.426 - Peer Community Journal, Volume 4 (2024), article no. e51.
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Section: Microbiology
Molybdate delays sulphide formation in the sediment and transfer to the bulk liquid in a model shrimp pond
10.24072/pcjournal.421 - Peer Community Journal, Volume 4 (2024), article no. e50.
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Section: Microbiology ; Topics: Agricultural sciences, Microbiology, Population biology
Bacterial pathogens dynamic during multi-species infections
10.24072/pcjournal.418 - Peer Community Journal, Volume 4 (2024), article no. e49.
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Section: Neuroscience ; Topics: Neuroscience
The Switchmaze: an open-design device for measuring motivation and drive switching in mice
Hartmann, Clara; Mahajan, Ambika; Borges, Vinicius; Razenberg, Lotte; Thönnes, Yves; Karnani, Mahesh Miikael
10.24072/pcjournal.416 - Peer Community Journal, Volume 4 (2024), article no. e48.
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Section: Mathematical & Computational Biology ; Topics: Genetics/genomics, Computer sciences
Revisiting pangenome openness with k-mers
10.24072/pcjournal.415 - Peer Community Journal, Volume 4 (2024), article no. e47.
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Section: Archaeology ; Topics: Archaeology, Chemistry
Multiproxy analysis exploring patterns of diet and disease in dental calculus and skeletal remains from a 19th century Dutch population
Bartholdy, Bjørn Peare;
Hasselstrøm, Jørgen B.;
Sørensen, Lambert K.;
Casna, Maia;
Hoogland, Menno;
Historisch Genootschap Beemster;
Henry, Amanda G.
10.24072/pcjournal.414 - Peer Community Journal, Volume 4 (2024), article no. e46.
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Section: Evolutionary Biology ; Topics: Evolution, Genetics/genomics, Population biology
Does the seed fall far from the tree? Weak fine-scale genetic structure in a continuous Scots pine population
10.24072/pcjournal.413 - Peer Community Journal, Volume 4 (2024), article no. e45.
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Section: Ecology
Changes in length-at-first return of a sea trout (Salmo trutta) population in northern France
10.24072/pcjournal.411 - Peer Community Journal, Volume 4 (2024), article no. e44.
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Section: Zoology ; Topics: Ecology, Genetics/genomics, Microbiology
Transcriptomic responses of sponge holobionts to in situ, seasonal anoxia and hypoxia
Strehlow, Brian W.;
Schuster, Astrid;
Francis, Warren R.;
Eckford-Soper, Lisa;
Kraft, Beate;
McAllen, Rob;
Nielsen, Ronni;
Mandrup, Susanne;
Canfield, Donald E.
10.24072/pcjournal.410 - Peer Community Journal, Volume 4 (2024), article no. e43.
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Section: Archaeology ; Topics: Archaeology, Anthropology
Social Network Analysis of Ancient Japanese Obsidian Artifacts Reflecting Sampling Bias Reduction
10.24072/pcjournal.409 - Peer Community Journal, Volume 4 (2024), article no. e42.
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Section: Animal Science ; Topics: Agricultural sciences, Genetics/genomics
Genetic background of body reserves in laying hens through backfat thickness phenotyping
Bédère, Nicolas;
Dupont, Joëlle;
Baumard, Yannick;
Staub, Christophe;
Gourichon, David;
Frédéric, Elleboudt;
Le Roy, Pascale;
Zerjal, Tatiana
10.24072/pcjournal.412 - Peer Community Journal, Volume 4 (2024), article no. e41.
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Section: Ecology ; Topics: Ecology, Environmental sciences, Population biology
How does dispersal shape the genetic patterns of animal populations in European cities? A simulation approach
Savary, Paul;
Tannier, Cécile;
Foltête, Jean-Christophe;
Bourgeois, Marc;
Vuidel, Gilles;
Khimoun, Aurélie;
Moal, Hervé;
Garnier, Stéphane
10.24072/pcjournal.407 - Peer Community Journal, Volume 4 (2024), article no. e40.
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Section: Infections ; Topics: Population biology, Applied mathematics, Health sciences
A Bayesian analysis of birth pulse effects on the probability of detecting Ebola virus in fruit bats
Pleydell, David R.J.;
Ndong Bass, Innocent;
Mba Djondzo, Flaubert Auguste;
Meta Djomsi, Dowbiss;
Kouanfack, Charles;
Peeters, Martine;
Cappelle, Julien
10.24072/pcjournal.380 - Peer Community Journal, Volume 4 (2024), article no. e39.
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Section: Ecology ; Topics: Biology of interactions, Ecology, Evolution
Cities as parasitic amplifiers? Malaria prevalence and diversity in great tits along an urbanization gradient
Caizergues, Aude E.;
Robira, Benjamin;
Perrier, Charles;
Jeanneau, Mélanie;
Berthomieu, Arnaud;
Perret, Samuel;
Gandon, Sylvain;
Charmantier, Anne
10.24072/pcjournal.405 - Peer Community Journal, Volume 4 (2024), article no. e38.
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Section: Network Science ; Topics: Statistics
Comparison of modularity-based approaches for nodes clustering in hypergraphs
10.24072/pcjournal.404 - Peer Community Journal, Volume 4 (2024), article no. e37.
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Section: Genomics ; Topics: Evolution, Genetics/genomics
Convergent origin and accelerated evolution of vesicle-associated RhoGAP proteins in two unrelated parasitoid wasps
Colinet, Dominique;
Cavigliasso, Fanny;
Leobold, Matthieu;
Pichon, Apolline;
Urbach, Serge;
Cazes, Dominique;
Poullet, Marine;
Belghazi, Maya;
Volkoff, Anne-Nathalie;
Drezen, Jean-Michel;
Gatti, Jean-Luc;
Poirié, Marylène
10.24072/pcjournal.406 - Peer Community Journal, Volume 4 (2024), article no. e36.
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Section: Zoology ; Topics: Ecology
A comparison of the parasitoid wasp species richness of tropical forest sites in Peru and Uganda – subfamily Rhyssinae (Hymenoptera: Ichneumonidae)
10.24072/pcjournal.398 - Peer Community Journal, Volume 4 (2024), article no. e35.
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Section: Paleontology ; Topics: Evolution, Paleontology, Anthropology
OH 89: A newly described ~1.8-million-year-old hominid clavicle from Olduvai Gorge
10.24072/pcjournal.372 - Peer Community Journal, Volume 4 (2024), article no. e34.
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Section: Evolutionary Biology ; Topics: Evolution, Genetics/genomics, Computer sciences
Simultaneous Inference of Past Demography and Selection from the Ancestral Recombination Graph under the Beta Coalescent
Korfmann, Kevin;
Sellinger, Thibaut Paul Patrick;
Freund, Fabian;
Fumagalli, Matteo;
Tellier, Aurélien
10.24072/pcjournal.397 - Peer Community Journal, Volume 4 (2024), article no. e33.
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Section: Genomics ; Topics: Evolution, Genetics/genomics
The genome sequence of the Montseny horsehair worm, Gordionus montsenyensis sp. nov., a key resource to investigate Ecdysozoa evolution
Eleftheriadi, Klara;
Guiglielmoni, Nadège;
Salces-Ortiz, Judit;
Vargas-Chavez, Carlos;
Martínez-Redondo, Gemma I.;
Gut, Marta;
Flot, Jean-François;
Schmidt-Rhaesa, Andreas;
Fernández, Rosa
10.24072/pcjournal.381 - Peer Community Journal, Volume 4 (2024), article no. e32.
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Section: Health & Movement Sciences ; Topics: Health sciences, Neuroscience
Interlimb coordination in Parkinson’s Disease is minimally affected by a visuospatial dual task
10.24072/pcjournal.387 - Peer Community Journal, Volume 4 (2024), article no. e31.
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Section: Ecology ; Topics: Ecology
The challenges of independence: ontogeny of at-sea behaviour in a long-lived seabird
10.24072/pcjournal.386 - Peer Community Journal, Volume 4 (2024), article no. e30.
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Section: Archaeology ; Topics: Archaeology, Ecology, Paleontology
A note on predator-prey dynamics in radiocarbon datasets
10.24072/pcjournal.395 - Peer Community Journal, Volume 4 (2024), article no. e29.
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Section: Ecology ; Topics: Ecology, Population biology, Statistics
Beyond variance: simple random distributions are not a good proxy for intraspecific variability in systems with environmental structure
Girard-Tercieux, Camille;
Vieilledent, Ghislain;
Clark, Adam;
Clark, James S.;
Courbaud, Benoit;
Fortunel, Claire;
Kunstler, Georges;
Pélissier, Raphaël;
Rüger, Nadja;
Maréchaux, Isabelle
10.24072/pcjournal.360 - Peer Community Journal, Volume 4 (2024), article no. e28.
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Section: Evolutionary Biology ; Topics: Ecology, Evolution, Population biology
Interplay between fecundity, sexual and growth selection on the spring phenology of European beech (Fagus sylvatica L.).
10.24072/pcjournal.396 - Peer Community Journal, Volume 4 (2024), article no. e27.
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Section: Genomics ; Topics: Evolution, Genetics/genomics, Population biology
High quality genome assembly of the brown hare (Lepus europaeus) with chromosome-level scaffolding
Michell, Craig;
Collins, Joanna;
Laine, Pia K.;
Fekete, Zsófia;
Tapanainen, Riikka;
Wood, Jonathan M. D.;
Goffart, Steffi;
Pohjoismäki, Jaakko L. O.
10.24072/pcjournal.393 - Peer Community Journal, Volume 4 (2024), article no. e26.
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Section: Evolutionary Biology ; Topics: Evolution
Rapid life-history evolution reinforces competitive asymmetry between invasive and resident species
10.24072/pcjournal.394 - Peer Community Journal, Volume 4 (2024), article no. e25.
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Section: Mathematical & Computational Biology ; Topics: Agricultural sciences, Ecology, Computer sciences
A workflow for processing global datasets: application to intercropping
10.24072/pcjournal.389 - Peer Community Journal, Volume 4 (2024), article no. e24.
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Section: Network Science ; Topics: Psychological and cognitive sciences, Applied mathematics, Health sciences
The Complexity of Social Networks in Healthy Aging: Novel Metrics and Their Associations with Psychological Well-Being
10.24072/pcjournal.388 - Peer Community Journal, Volume 4 (2024), article no. e23.
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Section: Evolutionary Biology ; Topics: Evolution, Microbiology, Plant biology
How to survive the mutational meltdown: lessons from plant RNA viruses
10.24072/pcjournal.379 - Peer Community Journal, Volume 4 (2024), article no. e22.
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Section: Infections ; Topics: Ecology, Evolution, Population biology
Population genetics of Glossina palpalis gambiensis in the sleeping sickness focus of Boffa (Guinea) before and after eight years of vector control: no effect of control despite a significant decrease of human exposure to the disease
Kagbadouno, Moise S; Séré, Modou;
Ségard, Adeline;
Camara, Abdoulaye Dansy;
Camara, Mamadou;
Bucheton, Bruno;
Bart, Jean-Mathieu;
Courtin, Fabrice;
De Meeûs, Thierry;
Ravel, Sophie
10.24072/pcjournal.383 - Peer Community Journal, Volume 4 (2024), article no. e21.
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Section: Animal Science ; Topics: Agricultural sciences, Applied biological sciences, Health sciences
On-farm hatching and contact with adult hen post hatch induce sex-dependent effects on performance, health and robustness in broiler chickens
Guilloteau, Laurence A;
Bertin, Aline;
Crochet, Sabine;
Bagnard, Charlotte;
Hondelatte, Alice;
Ravon, Laure;
Schouler, Catherine;
Germain, Karine;
Collin, Anne
10.24072/pcjournal.382 - Peer Community Journal, Volume 4 (2024), article no. e20.
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Section: Infections ; Topics: Biology of interactions, Genetics/genomics, Microbiology
Celebrating the 20th anniversary of the first Xanthomonas genome sequences – how genomics revolutionized taxonomy, provided insight into the emergence of pathogenic bacteria, enabled new fundamental discoveries and helped developing novel control measures – a perspective from the French network on Xanthomonads
Koebnik, Ralf;
Cesbron, Sophie;
Chen, Nicolas W. G.;
Fischer-Le Saux, Marion;
Hutin, Mathilde;
Jacques, Marie-Agnès;
Noël, Laurent D.;
Perez-Quintero, Alvaro;
Portier, Perrine;
Pruvost, Olivier;
Rieux, Adrien;
Szurek, Boris
10.24072/pcjournal.385 - Peer Community Journal, Volume 4 (2024), article no. e19.
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Section: Infections ; Topics: Biology of interactions, Ecology, Evolution
Spring reproductive success influences autumnal malarial load in a passerine bird
Pigeault, Romain;
Cozzarolo, Camille-Sophie;
Wassef, Jérôme;
Gremion, Jérémy;
Bastardot, Marc;
Glaizot, Olivier;
Christe, Philippe
10.24072/pcjournal.378 - Peer Community Journal, Volume 4 (2024), article no. e18.
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Section: Evolutionary Biology ; Topics: Evolution, Genetics/genomics
Can mechanistic constraints on recombination reestablishment explain the long-term maintenance of degenerate sex chromosomes?
10.24072/pcjournal.373 - Peer Community Journal, Volume 4 (2024), article no. e17.
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Section: Evolutionary Biology ; Topics: Ecology, Evolution, Microbiology
Community structure of heritable viruses in a Drosophila-parasitoids complex
10.24072/pcjournal.371 - Peer Community Journal, Volume 4 (2024), article no. e16.
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Section: Ecology ; Topics: Ecology, Environmental sciences
Use of linear features by red-legged partridges in an intensive agricultural landscape: implications for landscape management in farmland
10.24072/pcjournal.368 - Peer Community Journal, Volume 4 (2024), article no. e15.
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Section: Ecology ; Topics: Ecology, Microbiology, Population biology
Pathogen community composition and co-infection patterns in a wild community of rodents
Abbate, Jessica L.;
Galan, Maxime;
Razzauti, Maria;
Sironen, Tarja;
Voutilainen, Liina;
Henttonen, Heikki;
Gasqui, Patrick;
Cosson, Jean-François;
Charbonnel, Nathalie
10.24072/pcjournal.370 - Peer Community Journal, Volume 4 (2024), article no. e14.
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Section: Animal Science ; Topics: Agricultural sciences, Genetics/genomics, Population biology
Assessing the potential of germplasm collections for the management of genetic diversity: the case of the French National Cryobank
Jacques, Alicia;
Duclos, Delphine;
Danchin-Burge, Coralie;
Mercat, Marie-José;
Tixier-Boichard, Michèle;
Restoux, Gwendal
10.24072/pcjournal.369 - Peer Community Journal, Volume 4 (2024), article no. e13.
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Section: Microbiology ; Topics: Microbiology
Comparison of enrichment methods for efficient nitrogen fixation on a biocathode
10.24072/pcjournal.365 - Peer Community Journal, Volume 4 (2024), article no. e12.
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Section: Infections ; Topics: Systems biology, Geography, Medical sciences
Physiological and behavioural resistance of malaria vectors in rural West-Africa: a data mining study to address their fine-scale spatiotemporal heterogeneity, drivers, and predictability
Taconet, Paul;
Soma, Dieudonné Diloma;
Zogo, Barnabas;
Mouline, Karine;
Simard, Frédéric;
Koffi, Alphonsine Amanan;
Dabiré, Roch Kounbobr;
Pennetier, Cédric;
Moiroux, Nicolas
10.24072/pcjournal.367 - Peer Community Journal, Volume 4 (2024), article no. e11.
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Section: Infections ; Topics: Ecology, Statistics, Health sciences
Assessing the dynamics of Mycobacterium bovis infection in three French badger populations
Calenge, Clément;
Payne, Ariane;
Réveillaud, Édouard;
Richomme, Céline;
Girard, Sébastien;
Desvaux, Stéphanie
10.24072/pcjournal.363 - Peer Community Journal, Volume 4 (2024), article no. e10.
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Section: Mathematical & Computational Biology ; Topics: Population biology, Applied mathematics, Statistics
A mechanistic-statistical approach to infer dispersal and demography from invasion dynamics, applied to a plant pathogen
Saubin, Méline;
Coville, Jérome;
Xhaard, Constance;
Frey, Pascal;
Soubeyrand, Samuel;
Halkett, Fabien;
Fabre, Frédéric
10.24072/pcjournal.356 - Peer Community Journal, Volume 4 (2024), article no. e9.
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Section: Evolutionary Biology ; Topics: Ecology, Evolution, Genetics/genomics
Genomic relationships among diploid and polyploid species of the genus Ludwigia L. section Jussiaea using a combination of molecular cytogenetic, morphological, and crossing investigations
Barloy, Dominique;
Portillo-Lemus, Luis;
Krueger-Hadfield, Stacy;
Huteau, Virginie;
Coriton, Olivier
10.24072/pcjournal.364 - Peer Community Journal, Volume 4 (2024), article no. e8.
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Section: Microbiology ; Topics: Agricultural sciences, Ecology, Microbiology
Diversity of bacterial symbionts associated with the tropical plant bug Monalonion velezangeli (Hemiptera: Miridae) revealed by high-throughput 16S-rRNA sequencing
10.24072/pcjournal.362 - Peer Community Journal, Volume 4 (2024), article no. e7.
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Section: Ecotoxicology & Environmental Chemistry ; Topics: Applied biological sciences, Environmental sciences, Sustainability science
Characterization of the bioaccumulation and toxicity of copper pyrithione, an antifouling compound, on juveniles of rainbow trout
10.24072/pcjournal.358 - Peer Community Journal, Volume 4 (2024), article no. e6.
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Section: Archaeology ; Topics: Archaeology
Dealing with post-excavation data: the Omeka S TiMMA web-database
10.24072/pcjournal.366 - Peer Community Journal, Volume 4 (2024), article no. e5.
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Section: Ecology ; Topics: Ecology
Methods for tagging an ectoparasite, the salmon louse Lepeophtheirus salmonis
10.24072/pcjournal.361 - Peer Community Journal, Volume 4 (2024), article no. e4.
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Section: Mathematical & Computational Biology ; Topics: Biophysics and computational biology, Evolution, Genetics/Genomics
An approximate likelihood method reveals ancient gene flow between human, chimpanzee and gorilla
10.24072/pcjournal.359 - Peer Community Journal, Volume 4 (2024), article no. e3.
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Section: Ecology ; Topics: Ecology, Population biology
Seasonality of host-seeking Ixodes ricinus nymph abundance in relation to climate
Hoch, Thierry;
Madouasse, Aurélien;
Jacquot, Maude;
Wongnak, Phrutsamon;
Beugnet, Fréderic;
Bournez, Laure;
Cosson, Jean-François;
Huard, Frédéric;
Moutailler, Sara;
Plantard, Olivier;
Poux, Valérie;
René-Martellet, Magalie;
Vayssier-Taussat, Muriel;
Verheyden, Hélène;
Vourc’h, Gwenaël;
Chalvet-Monfray, Karine;
Agoulon, Albert
10.24072/pcjournal.355 - Peer Community Journal, Volume 4 (2024), article no. e2.
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Section: Ecology ; Topics: Ecology, Statistics ; Conference: Euring 2023
Mt or not Mt: Temporal variation in detection probability in spatial capture-recapture and occupancy models
10.24072/pcjournal.357 - Peer Community Journal, Volume 4 (2024), article no. e1.
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