Table of Contents

Number of articles: 93

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  Genomics

  Expression of cell-wall related genes is highly variable and correlates with sepal morphology

  Hartasánchez, Diego A.; Kiss, Annamaria; Battu, Virginie; Soraru, Charline; Delgado-Vaquera, Abigail; Massinon, Florian; Brasó-Vives, Marina; Mollier, Corentin; Martin-Magniette, Marie-Laure; Boudaoud, Arezki; Monéger, Françoise

  10.24072/pcjournal.327 - Peer Community Journal, Volume 3 (2023), article no. e93.

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  Evolutionary Biology

  How do monomorphic bacteria evolve? The Mycobacterium tuberculosis complex and the awkward population genetics of extreme clonality

  Stritt, Christoph; Gagneux, Sebastien

  10.24072/pcjournal.322 - Peer Community Journal, Volume 3 (2023), article no. e92.

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  Infections

  A soft tick vector of Babesia sp. YLG in Yellow-legged gull (Larus michahellis) nests

  Bonsergent, Claire; Vittecoq, Marion; Leray, Carole; Jouglin, Maggy; Buysse, Marie; McCoy, Karen D.; Malandrin, Laurence

  10.24072/pcjournal.316 - Peer Community Journal, Volume 3 (2023), article no. e91.

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  Ecotoxicology & Environmental Chemistry

  DRomics, a workflow to exploit dose-response omics data in ecotoxicology

  Delignette-Muller, Marie Laure; Siberchicot, Aurélie; Larras, Floriane; Billoir, Elise

  10.24072/pcjournal.325 - Peer Community Journal, Volume 3 (2023), article no. e90.

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  Animal Science

  Validation of a Radio frequency identification system for tracking location of laying hens in a quasi-commercial aviary system

  Gebhardt-Henrich, Sabine G.; Kashev, Alexander; Petelle, Matthew B.; Toscano, Michael J.

  10.24072/pcjournal.324 - Peer Community Journal, Volume 3 (2023), article no. e89.

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  Microbiology

  Comparative abundance and diversity of populations of the Pseudomonas syringae and Soft Rot Pectobacteriaceae species complexes throughout the Durance River catchment from its French Alps sources to its delta

  Morris, C.E.; Lacroix, C.; Chandeysson, C.; Guilbaud, C.; Monteil, C.; Piry, S.; Rochelle Newall, E.; Fiorini, S.; Van Gijsegem, F.; Barny, M.A.; Berge, O.

  10.24072/pcjournal.317 - Peer Community Journal, Volume 3 (2023), article no. e88.

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  Mathematical & Computational Biology

  General encoding of canonical k-mers

  Wittler, Roland

  10.24072/pcjournal.323 - Peer Community Journal, Volume 3 (2023), article no. e87.

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  Animal Science

  Combining several indicators to assess the effectiveness of tailor-made health plans in pig farms

  Levallois, Pierre; Leblanc-Maridor, Mily; Scollo, Annalisa; Ferrari, Paolo; Belloc, Catherine; Fourichon, Christine

  10.24072/pcjournal.318 - Peer Community Journal, Volume 3 (2023), article no. e86.

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  Ecology

  Implementing a rapid geographic range expansion - the role of behavior changes

  Logan, Corina; McCune, Kelsey; LeGrande-Rolls, Christa; Marfori, Zara; Hubbard, Josephine; Lukas, Dieter

  10.24072/pcjournal.320 - Peer Community Journal, Volume 3 (2023), article no. e85.

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  Genomics

  The demographic history of the wild crop relative Brachypodium distachyon is shaped by distinct past and present ecological niches

  Minadakis, Nikolaos; Williams, Hefin; Horvath, Robert; Caković, Danka; Stritt, Christoph; Thieme, Michael; Bourgeois, Yann; Roulin, Anne C.

  10.24072/pcjournal.319 - Peer Community Journal, Volume 3 (2023), article no. e84.

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  Registered Reports

  Life Thinning and Gaming Disorder: A Longitudinal Qualitative Registered Report

  Karhulahti, Veli-Matti; Siutila, Miia; Vahlo, Jukka; Koskimaa, Raine

  10.24072/pcjournal.313 - Peer Community Journal, Volume 3 (2023), article no. e83.

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  Ecology

  Provision of essential resources as a persistence strategy in food webs

  Raatz, Michael

  10.24072/pcjournal.315 - Peer Community Journal, Volume 3 (2023), article no. e82.

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  Infections

  The distribution, phenology, host range and pathogen prevalence of Ixodes ricinus in France: a systematic map and narrative review

  Perez, Grégoire; Bournez, Laure; Boulanger, Nathalie; Fite, Johanna; Livoreil, Barbara; McCoy, Karen D.; Quillery, Elsa; René-Martellet, Magalie; Bonnet, Sarah I.

  10.24072/pcjournal.291 - Peer Community Journal, Volume 3 (2023), article no. e81.

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  Archaeology

  Geometric morphometric analysis of projectile points from the Southwest United States

  Bischoff, Robert J.

  10.24072/pcjournal.312 - Peer Community Journal, Volume 3 (2023), article no. e80.

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  Genomics

  Efficient k-mer based curation of raw sequence data: application in Drosophila suzukii

  Gautier, Mathieu

  10.24072/pcjournal.309 - Peer Community Journal, Volume 3 (2023), article no. e79.

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  Forest & Wood Sciences

  Modelling the growth stress in tree branches: eccentric growth vs. reaction wood

  Van Rooij, Arnoul; Badel, Eric; Barczi, Jean-François; Caraglio, Yves; Almeras, Tancrede; Gril, Joseph

  10.24072/pcjournal.308 - Peer Community Journal, Volume 3 (2023), article no. e78.

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  Health & Movement Sciences

  Comparing habit-behaviour relationships for organised versus leisure time physical activity

  Newman, Katerina; Forestier, Cyril; Cheval, Boris; Zenko, Zachary; de Chanaleilles, Margaux; Gardner, Benjamin; Rebar, Amanda L.

  10.24072/pcjournal.311 - Peer Community Journal, Volume 3 (2023), article no. e77.

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• 

  Infections

  A global Corynebacterium diphtheriae genomic framework sheds light on current diphtheria reemergence

  Hennart, Mélanie; Crestani, Chiara; Bridel, Sébastien; Armatys, Nathalie; Brémont, Sylvie; Carmi-Leroy, Annick; Landier, Annie; Passet, Virginie; Fonteneau, Laure; Vaux, Sophie; Toubiana, Julie; Badell, Edgar; Brisse, Sylvain

  10.24072/pcjournal.307 - Peer Community Journal, Volume 3 (2023), article no. e76.

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• 

  Genomics

  Genomic data suggest parallel dental vestigialization within the xenarthran radiation

  Emerling, Christopher A; Gibb, Gillian C; Tilak, Marie-Ka; Hughes, Jonathan J; Kuch, Melanie; Duggan, Ana T; Poinar, Hendrik N; Nachman, Michael W; Delsuc, Frédéric

  10.24072/pcjournal.303 - Peer Community Journal, Volume 3 (2023), article no. e75.

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• 

  Evolutionary Biology

  Phylogeographic breaks and how to find them: An empirical attempt at separating vicariance from isolation by distance in a lizard with restricted dispersal

  Rancilhac, Loïs; Miralles, Aurélien; Geniez, Philippe; Mendez-Aranda, Daniel; Beddek, Menad; Brito, José Carlos; Leblois, Raphaël; Crochet, Pierre-André

  10.24072/pcjournal.301 - Peer Community Journal, Volume 3 (2023), article no. e74.

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  Animal Science

  Ensuring ethical animal welfare research: Are more ethics review committees the solution?

  Nielsen, Birte L.; Golledge, Huw D. R.; Chou, Jen-Yun; Camerlink, Irene; Pongrácz, Péter; Ceballos, Maria Camila; Whittaker, Alexandra L.; Olsson, I. Anna S.

  10.24072/pcjournal.310 - Peer Community Journal, Volume 3 (2023), article no. e73.

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• 

  Microbiology

  Within-species variation in the gut microbiome of medaka (Oryzias latipes) is driven by the interaction of light intensity and genetic background

  Evangelista, Charlotte; Kamenova, Stefaniya; Diaz Pauli, Beatriz; Sandkjenn, Joakim; Vøllestad, Leif Asbjørn; Edeline, Eric; Trosvik, Pål; de Muinck, Eric Jacques

  10.24072/pcjournal.306 - Peer Community Journal, Volume 3 (2023), article no. e72.

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  Evolutionary Biology

  Sensitive windows for within- and trans-generational plasticity of anti-predator defences

  Tariel-Adam, Juliette; Luquet, Émilien; Plénet, Sandrine

  10.24072/pcjournal.304 - Peer Community Journal, Volume 3 (2023), article no. e71.

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  Ecology

  Behavioral flexibility is manipulable and it improves flexibility and innovativeness in a new context

  Logan, Corina; Lukas, Dieter; Blaisdell, Aaron; Johnson-Ulrich, Zoe; MacPherson, Maggie; Seitz, Benjamin; Sevchik, August; McCune, Kelsey

  10.24072/pcjournal.284 - Peer Community Journal, Volume 3 (2023), article no. e70.

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  Ecology

  Being a tree crop increases the odds of experiencing yield declines irrespective of pollinator dependence

  Aizen, Marcelo A.; Gleiser, Gabriela; Kitzberger, Thomas A.; Milla, Ruben

  10.24072/pcjournal.305 - Peer Community Journal, Volume 3 (2023), article no. e69.

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• 

  Forest & Wood Sciences

  Pollen contamination and mating structure in maritime pine (Pinus pinaster Ait.) clonal seed orchards revealed by SNP markers

  Bouffier, Laurent; Debille, Sandrine; Alazard, Pierre; Raffin, Annie; Pastuszka, Patrick; Trontin, Jean-François

  10.24072/pcjournal.302 - Peer Community Journal, Volume 3 (2023), article no. e68.

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  Animal Science

  The big challenge for livestock genomics is to make sequence data pay

  Johnsson, Martin

  10.24072/pcjournal.300 - Peer Community Journal, Volume 3 (2023), article no. e67.

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  Ecology

  Field margins as substitute habitat for the conservation of birds in agricultural wetlands

  Mallet, Pierre; Bechet, Arnaud; Sirami, Clelia; Mesleard, Francois; Blanchon, Thomas; Calatayud, Francois; Dagonet, Thomas; Gaget, Elie; Leray, Carole; Galewski, Thomas

  10.24072/pcjournal.299 - Peer Community Journal, Volume 3 (2023), article no. e66.

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  Evolutionary Biology

  Balancing selection at a wing pattern locus is associated with major shifts in genome-wide patterns of diversity and gene flow

  Rodríguez de Cara, María Ángeles; Jay, Paul; Rougemont, Quentin; Chouteau, Mathieu; Whibley, Annabel; Huber, Barbara; Piron-Prunier, Florence; Ramos, Renato Rogner; Freitas, André V. L.; Salazar, Camilo; Silva-Brandão, Karina Lucas; Torres, Tatiana Teixeira; Joron, Mathieu

  10.24072/pcjournal.298 - Peer Community Journal, Volume 3 (2023), article no. e65.

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• 

  Genomics

  Near-chromosome level genome assembly of devil firefish, Pterois miles

  Kitsoulis, Christos V.; Papadogiannis, Vasileios; Kristoffersen, Jon B.; Kaitetzidou, Elisavet; Sterioti, Aspasia; Tsigenopoulos, Costas S.; Manousaki, Tereza

  10.24072/pcjournal.295 - Peer Community Journal, Volume 3 (2023), article no. e64.

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  Mathematical & Computational Biology

  Cancer phylogenetic tree inference at scale from 1000s of single cell genomes

  Salehi, Sohrab; Dorri, Fatemeh; Chern, Kevin; Kabeer, Farhia; Rusk, Nicole; Funnell, Tyler; Williams, Marc J.; Lai, Daniel; Andronescu, Mirela; Campbell, Kieran R.; McPherson, Andrew; Aparicio, Samuel; Roth, Andrew; Shah, Sohrab P.; Bouchard-Côté, Alexandre

  10.24072/pcjournal.292 - Peer Community Journal, Volume 3 (2023), article no. e63.

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• 

  Paleontology

  A baenid turtle shell from the Mesaverde Formation (Campanian, Late Cretaceous) of Park County, Wyoming, USA

  Wu, Ka Yan; Heuck, Jared; Varriale, Frank J.; Farke, Andrew

  10.24072/pcjournal.297 - Peer Community Journal, Volume 3 (2023), article no. e62.

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  Neuroscience

  Optimizing the Benefits of Mental Practice on Motor Acquisition and Consolidation with Moderate-Intensity Exercise

  Rannaud Monany, Dylan; Lebon, Florent; Papaxanthis, Charalambos

  10.24072/pcjournal.296 - Peer Community Journal, Volume 3 (2023), article no. e61.

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  Evolutionary Biology

  Facultative parthenogenesis: a transient state in transitions between sex and obligate asexuality in stick insects?

  Larose, Chloé; Lavanchy, Guillaume; Freitas, Susana; Parker, Darren J.; Schwander, Tanja

  10.24072/pcjournal.283 - Peer Community Journal, Volume 3 (2023), article no. e60.

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  Ecology

  Colonisation debt: when invasion history impacts current range expansion

  Morel-Journel, Thibaut; Haond, Marjorie; Dunan, Lana; Mailleret, Ludovic; Vercken, Elodie

  10.24072/pcjournal.293 - Peer Community Journal, Volume 3 (2023), article no. e59.

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  Ecology

  Conservation networks do not match the ecological requirements of amphibians

  Matutini, Florence; Baudry, Jacques; Fortin, Marie-Josee; Pain, Guillaume; Pithon, Josephine

  10.24072/pcjournal.290 - Peer Community Journal, Volume 3 (2023), article no. e58.

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  Zoology

  Life-history traits, pace of life and dispersal among and within five species of Trichogramma wasps: a comparative analysis

  Guicharnaud, Chloé; Groussier, Géraldine; Beranger, Erwan; Lamy, Laurent; Vercken, Elodie; Dahirel, Maxime

  10.24072/pcjournal.294 - Peer Community Journal, Volume 3 (2023), article no. e57.

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  Ecology

  Evolutionary determinants of reproductive seasonality: A theoretical approach

  Burtschell, Lugdiwine; Dezeure, Jules; Huchard, Elise; Godelle, Bernard

  10.24072/pcjournal.286 - Peer Community Journal, Volume 3 (2023), article no. e56.

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  Archaeology

  SEAHORS: Spatial Exploration of ArcHaeological Objects in R Shiny

  Royer, Aurélien; Discamps, Emmanuel; Plutniak, Sébastien; Thomas, Marc

  10.24072/pcjournal.289 - Peer Community Journal, Volume 3 (2023), article no. e55.

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  Infections

  Multiple hosts, multiple impacts: the role of vertebrate host diversity in shaping mosquito life history and pathogen transmission

  Vantaux, Amélie; Moiroux, Nicolas; Dabiré, Kounbobr Roch; Cohuet, Anna; Lefèvre, Thierry

  10.24072/pcjournal.288 - Peer Community Journal, Volume 3 (2023), article no. e54.

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  Mathematical & Computational Biology

  Population genetics: coalescence rate and demographic parameters inference

  Mazet, Olivier; Noûs, Camille

  10.24072/pcjournal.285 - Peer Community Journal, Volume 3 (2023), article no. e53.

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  Ecology

  Effects of adaptive harvesting on fishing down processes and resilience changes in predator-prey and tritrophic systems

  Tromeur, Eric; Loeuille, Nicolas

  10.24072/pcjournal.268 - Peer Community Journal, Volume 3 (2023), article no. e52.

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  Evolutionary Biology

  A new and almost perfectly accurate approximation of the eigenvalue effective population size of a dioecious population: comparisons with other estimates and detailed proofs

  De Meeûs, Thierry; Noûs, Camille

  10.24072/pcjournal.280 - Peer Community Journal, Volume 3 (2023), article no. e51.

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  Ecology

  Soil variation response is mediated by growth trajectories rather than functional traits in a widespread pioneer Neotropical tree

  Levionnois, Sébastien; Tysklind, Niklas; Nicolini, Eric; Ferry, Bruno; Troispoux, Valérie; Le Moguedec, Gilles; Morel, Hélène; Stahl, Clément; Coste, Sabrina; Caron, Henri; Heuret, Patrick

  10.24072/pcjournal.262 - Peer Community Journal, Volume 3 (2023), article no. e50.

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  Ecology

  Most diverse, most neglected: weevils (Coleoptera: Curculionoidea) are ubiquitous specialized brood-site pollinators of tropical flora

  Haran, Julien; Kergoat, Gael J.; de Medeiros, Bruno A. S.

  10.24072/pcjournal.279 - Peer Community Journal, Volume 3 (2023), article no. e49.

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  Ecology

  Symbiotic nutrient cycling enables the long-term survival of Aiptasia in the absence of heterotrophic food sources

  Rädecker, Nils; Meibom, Anders

  10.24072/pcjournal.281 - Peer Community Journal, Volume 3 (2023), article no. e48.

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  Evolutionary Biology

  Host-symbiont-gene phylogenetic reconciliation

  Menet, Hugo; Trung, Alexia Nguyen; Daubin, Vincent; Tannier, Eric

  10.24072/pcjournal.273 - Peer Community Journal, Volume 3 (2023), article no. e47.

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  Evolutionary Biology

  Co-obligate symbioses have repeatedly evolved across aphids, but partner identity and nutritional contributions vary across lineages

  Manzano-Marín, Alejandro; Coeur d’acier, Armelle; Clamens, Anne-Laure; Cruaud, Corinne; Barbe, Valérie; Jousselin, Emmanuelle

  10.24072/pcjournal.278 - Peer Community Journal, Volume 3 (2023), article no. e46.

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  Evolutionary Biology

  Domestication of different varieties in the cheese-making fungus Geotrichum candidum

  Bennetot, Bastien; Vernadet, Jean-Philippe; Perkins, Vincent; Hautefeuille, Sophie; Rodríguez de la Vega, Ricardo C.; O’Donnell, Samuel; Snirc, Alodie; Grondin, Cécile; Lessard, Marie-Hélène; Peron, Anne-Claire; Labrie, Steve; Landaud, Sophie; Giraud, Tatiana; Ropars, Jeanne

  10.24072/pcjournal.266 - Peer Community Journal, Volume 3 (2023), article no. e45.

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  Zoology

  Climate of origin influences how a herbivorous mite responds to drought-stressed host plants

  Migeon, Alain; Auger, Philippe; Fossati-Gaschignard, Odile; Hufbauer, Ruth A; Miranda, Maëva; Zriki, Ghais; Navajas, Maria

  10.24072/pcjournal.272 - Peer Community Journal, Volume 3 (2023), article no. e44.

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  Evolutionary Biology

  Durable resistance or efficient disease control? Adult Plant Resistance (APR) at the heart of the dilemma

  Rimbaud, Loup; Papaïx, Julien; Rey, Jean-François; Moury, Benoît; Barrett, Luke G.; Thrall, Peter H.

  10.24072/pcjournal.271 - Peer Community Journal, Volume 3 (2023), article no. e43.

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  Zoology

  Brood thermoregulation effectiveness is positively linked to the amount of brood but not to the number of bees in honeybee colonies

  Godeau, Ugoline; Pioz, Maryline; Martin, Olivier; Rüger, Charlotte; Crauser, Didier; Le Conte, Yves; Henry, Mickael; Alaux, Cédric

  10.24072/pcjournal.270 - Peer Community Journal, Volume 3 (2023), article no. e42.

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  Microbiology

  Genomic changes during the evolution of the Coxiella genus along the parasitism-mutualism continuum

  Santos-Garcia, Diego; Morel, Olivier; Henri, Hélène; El Filali, Adil; Buysse, Marie; Noël, Valérie; McCoy, Karen D.; Gottlieb, Yuval; Klasson, Lisa; Zenner, Lionel; Duron, Olivier; Vavre, Fabrice

  10.24072/pcjournal.269 - Peer Community Journal, Volume 3 (2023), article no. e41.

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  Evolutionary Biology

  The landscape of nucleotide diversity in Drosophila melanogaster is shaped by mutation rate variation

  Barroso, Gustavo V; Dutheil, Julien Y

  10.24072/pcjournal.267 - Peer Community Journal, Volume 3 (2023), article no. e40.

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  Infections

  Evolution within a given virulence phenotype (pathotype) is driven by changes in aggressiveness: a case study of French wheat leaf rust populations

  Fontyn, Cécilia; Meyer, Kevin JG; Boixel, Anne-Lise; Delestre, Ghislain; Piaget, Emma; Picard, Corentin; Suffert, Frédéric; Marcel, Thierry C; Goyeau, Henriette

  10.24072/pcjournal.264 - Peer Community Journal, Volume 3 (2023), article no. e39.

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  Ecology

  Feeding and growth variations affect δ13C and δ15N budgets during ontogeny in a lepidopteran larva

  Charberet, Samuel M.; Maria, Annick; Siaussat, David; Gounand, Isabelle; Mathieu, Jérôme

  10.24072/pcjournal.265 - Peer Community Journal, Volume 3 (2023), article no. e38.

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  Evolutionary Biology

  Primate sympatry shapes the evolution of their brain architecture

  Robira, Benjamin; Perez-Lamarque, Benoît

  10.24072/pcjournal.259 - Peer Community Journal, Volume 3 (2023), article no. e37.

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  Animal Science

  The use of pigs vocalisation structure to assess the quality of human-pig relationship

  Villain, Avelyne S; Guérin, Carole; Tallet, Céline

  10.24072/pcjournal.260 - Peer Community Journal, Volume 3 (2023), article no. e36.

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  Ecology

  Rapid literature mapping on the recent use of machine learning for wildlife imagery

  Nakagawa, Shinichi; Lagisz, Malgorzata; Francis, Roxane; Tam, Jessica; Li, Xun; Elphinstone, Andrew; Jordan, Neil R.; O'Brien, Justine K.; Pitcher, Benjamin J.; Van Sluys, Monique; Sowmya, Arcot; Kingsford, Richard T.

  10.24072/pcjournal.261 - Peer Community Journal, Volume 3 (2023), article no. e35.

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  Ecology

  Data stochasticity and model parametrisation impact the performance of species distribution models: insights from a simulation study

  Lambert, Charlotte; Virgili, Auriane

  10.24072/pcjournal.263 - Peer Community Journal, Volume 3 (2023), article no. e34.

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  Ecology

  Different approaches to processing environmental DNA samples in turbid waters have distinct effects for fish, bacterial and archaea communities

  Turba, Rachel; Thai, Glory H.; Jacobs, David K.

  10.24072/pcjournal.256 - Peer Community Journal, Volume 3 (2023), article no. e33.

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  Infections

  The helper strategy in vector-transmission of plant viruses

  Di Mattia, Jérémy; Zeddam, Jean-Louis; Uzest, Marilyne; Blanc, Stéphane

  10.24072/pcjournal.258 - Peer Community Journal, Volume 3 (2023), article no. e32.

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  Zoology

  Population genetics of Glossina fuscipes fuscipes from southern Chad

  Ravel, Sophie; Mahamat, Mahamat Hissène; Ségard, Adeline; Argilés-Herrero, Rafael; Bouyer, Jérémy; Rayaisse, Jean-Baptiste; Solano, Philippe; Guihini Mollo, Brahim; Pèka, Mallaye; Darnas, Justin; Belem, Adrien Marie Gaston; Yoni, Wilfrid; Noûs, Camille; De Meeûs, Thierry

  10.24072/pcjournal.257 - Peer Community Journal, Volume 3 (2023), article no. e31.

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  Mathematical & Computational Biology

  Marker and source-marker reprogramming of Most Permissive Boolean networks and ensembles with BoNesis

  Paulevé, Loïc

  10.24072/pcjournal.255 - Peer Community Journal, Volume 3 (2023), article no. e30.

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  Evolutionary Biology

  Extrinsic mortality and senescence: a guide for the perplexed

  de Vries, Charlotte; Galipaud, Matthias; Kokko, Hanna

  10.24072/pcjournal.253 - Peer Community Journal, Volume 3 (2023), article no. e29.

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  Genomics

  MacSyFinder v2: Improved modelling and search engine to identify molecular systems in genomes

  Néron, Bertrand; Denise, Rémi; Coluzzi, Charles; Touchon, Marie; Rocha, Eduardo P.C.; Abby, Sophie S.

  10.24072/pcjournal.250 - Peer Community Journal, Volume 3 (2023), article no. e28.

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  Genomics

  Performance and limitations of linkage-disequilibrium-based methods for inferring the genomic landscape of recombination and detecting hotspots: a simulation study

  Raynaud, Marie; Gagnaire, Pierre-Alexandre; Galtier, Nicolas

  10.24072/pcjournal.254 - Peer Community Journal, Volume 3 (2023), article no. e27.

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  Ecology

  Best organic farming expansion scenarios for pest control: a modeling approach

  Delattre, Thomas; Memah, Mohamed-Mahmoud; Franck, Pierre; Valsesia, Pierre; Lavigne, Claire

  10.24072/pcjournal.251 - Peer Community Journal, Volume 3 (2023), article no. e26.

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  Microbiology

  Comparative genomics and transcriptomic response to root exudates of six rice root-associated Burkholderia sensu lato species

  Wallner, Adrian; Klonowska, Agnieszka; Guigard, Ludivine; King, Eoghan; Rimbault, Isabelle; Ngonkeu, Eddy; Nguyen, Phuong; Béna, Gilles; Moulin, Lionel

  10.24072/pcjournal.252 - Peer Community Journal, Volume 3 (2023), article no. e25.

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  Infections

  African army ants at the forefront of virome surveillance in a remote tropical forest

  Fritz, Matthieu; Reggiardo, Bérénice; Filloux, Denis; Claude, Lisa; Fernandez, Emmanuel; Mahé, Frédéric; Kraberger, Simona; Custer, Joy M.; Becquart, Pierre; Mebaley, Telstar Ndong; Kombila, Linda Bohou; Lenguiya, Léadisaelle H.; Boundenga, Larson; Mombo, Illich M.; Maganga, Gael D.; Niama, Fabien R.; Koumba, Jean-Sylvain; Ogliastro, Mylène; Yvon, Michel; Martin, Darren P.; Blanc, Stéphane; Varsani, Arvind; Leroy, Eric; Roumagnac, Philippe

  10.24072/pcjournal.249 - Peer Community Journal, Volume 3 (2023), article no. e24.

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  Ecology

  The role of climate change and niche shifts in divergent range dynamics of a sister-species pair

  Summers, Jeremy; Lukas, Dieter; Logan, Corina J; Chen, Nancy

  10.24072/pcjournal.248 - Peer Community Journal, Volume 3 (2023), article no. e23.

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  Evolutionary Biology

  Increased birth rank of homosexual males: disentangling the older brother effect and sexual antagonism hypothesis

  Raymond, Michel; Turek, Daniel; Durand, Valérie; Nila, Sarah; Suryobroto, Bambang; Vadez, Julien; Barthes, Julien; Apostolou, Menelaos; Crochet, Pierre-André

  10.24072/pcjournal.247 - Peer Community Journal, Volume 3 (2023), article no. e22.

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  Neuroscience

  Automatic approach-avoidance tendency toward physical activity, sedentary, and neutral stimuli as a function of age, explicit affective attitude, and intention to be active

  Farajzadeh, Ata; Goubran, Miriam; Beehler, Alexa; Cherkaoui, Noura; Morrison, Paula; de Chanaleilles, Margaux; Maltagliati, Silvio; Cheval, Boris; Miller, Matthew W.; Sheehy, Lisa; Bilodeau, Martin; Orsholits, Dan; Boisgontier, Matthieu P.

  10.24072/pcjournal.246 - Peer Community Journal, Volume 3 (2023), article no. e21.

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  Evolutionary Biology

  The genetic architecture of local adaptation in a cline

  Laroche, Fabien; Lenormand, Thomas

  10.24072/pcjournal.245 - Peer Community Journal, Volume 3 (2023), article no. e20.

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  Genomics

  RAREFAN: A webservice to identify REPINs and RAYTs in bacterial genomes

  Fortmann-Grote, Carsten; Irmer, Julia von; Bertels, Frederic

  10.24072/pcjournal.244 - Peer Community Journal, Volume 3 (2023), article no. e19.

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  Infections

  Three-way relationships between gut microbiota, helminth assemblages and bacterial infections in wild rodent populations

  Bouilloud, Marie; Galan, Maxime; Dubois, Adelaide; Diagne, Christophe; Marianneau, Philippe; Roche, Benjamin; Charbonnel, Nathalie

  10.24072/pcjournal.243 - Peer Community Journal, Volume 3 (2023), article no. e18.

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  Infections

  Whole blood transcriptome profiles of trypanotolerant and trypanosusceptible cattle highlight a differential modulation of metabolism and immune response during infection by Trypanosoma congolense

  Peylhard, Moana; Berthier, David; Dayo, Guiguigbaza-Kossigan; Chantal, Isabelle; Sylla, Souleymane; Nidelet, Sabine; Dubois, Emeric; Martin, Guillaume; Sempéré, Guilhem; Flori, Laurence; Thévenon, Sophie

  10.24072/pcjournal.239 - Peer Community Journal, Volume 3 (2023), article no. e17.

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  Evolutionary Biology

  Heterogeneities in infection outcomes across species: sex and tissue differences in virus susceptibility

  Roberts, Katherine E; Longdon, Ben

  10.24072/pcjournal.242 - Peer Community Journal, Volume 3 (2023), article no. e16.

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  Ecology

  Four decades of phenology in an alpine amphibian: trends, stasis, and climatic drivers

  Lenzi, Omar; Grossenbacher, Kurt; Zumbach, Silvia; Lüscher, Beatrice; Althaus, Sarah; Schmocker, Daniela; Recher, Helmut; Thoma, Marco; Ozgul, Arpat; Schmidt, Benedikt R.

  10.24072/pcjournal.240 - Peer Community Journal, Volume 3 (2023), article no. e15.

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  Evolutionary Biology

  The fate of recessive deleterious or overdominant mutations near mating-type loci under partial selfing

  Tezenas, Emilie; Giraud, Tatiana; Véber, Amandine; Billiard, Sylvain

  10.24072/pcjournal.238 - Peer Community Journal, Volume 3 (2023), article no. e14.

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  Genomics

  Nucleosome patterns in four plant pathogenic fungi with contrasted genome structures

  Clairet, Colin; Lapalu, Nicolas; Simon, Adeline; Soyer, Jessica L.; Viaud, Muriel; Zehraoui, Enric; Dalmais, Berengère; Fudal, Isabelle; Ponts, Nadia

  10.24072/pcjournal.227 - Peer Community Journal, Volume 3 (2023), article no. e13.

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  Ecology

  The contrasted impacts of grasshoppers on soil microbial activities in function of primary production and herbivore diet

  Ibanez, Sébastien; Foulquier, Arnaud; Brun, Charles; Colace, Marie-Pascale; Piton, Gabin; Bernard, Lionel; Gallet, Christiane; Clément, Jean-Christophe

  10.24072/pcjournal.229 - Peer Community Journal, Volume 3 (2023), article no. e12.

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  Evolutionary Biology

  Artisanal and farmer bread making practices differently shape fungal species community composition in French sourdoughs

  Michel, Elisa; Masson, Estelle; Bubbendorf, Sandrine; Lapicque, Léocadie; Nidelet, Thibault; Segond, Diego; Guézenec, Stéphane; Marlin, Thérèse; Devillers, Hugo; Rué, Olivier; Onno, Bernard; Legrand, Judith; Sicard, Delphine

  10.24072/pcjournal.237 - Peer Community Journal, Volume 3 (2023), article no. e11.

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  Archaeology

  Parchment Glutamine Index (PQI): A novel method to estimate glutamine deamidation levels in parchment collagen obtained from low-quality MALDI-TOF data

  Nair, Bharath; Palomo, Ismael Rodríguez; Markussen, Bo; Wiuf, Carsten; Fiddyment, Sarah; Collins, Matthew James

  10.24072/pcjournal.230 - Peer Community Journal, Volume 3 (2023), article no. e10.

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  Genomics

  Phenotypic and transcriptomic analyses reveal major differences between apple and pear scab nonhost resistance

  Vergne, Emilie; Chevreau, Elisabeth; Ravon, Elisa; Gaillard, Sylvain; Pelletier, Sandra; Bahut, Muriel; Perchepied, Laure

  10.24072/pcjournal.225 - Peer Community Journal, Volume 3 (2023), article no. e9.

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  Evolutionary Biology

  Conditions for maintaining and eroding pseudo-overdominance and its contribution to inbreeding depression

  Abu-Awad, Diala; Waller, Donald

  10.24072/pcjournal.224 - Peer Community Journal, Volume 3 (2023), article no. e8.

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  Ecology

  Deleterious effects of thermal and water stresses on life history and physiology: a case study on woodlouse

  Depeux, Charlotte; Branger, Angèle; Moulignier, Théo; Moreau, Jérôme; Lemaître, Jean-François; Dechaume-Moncharmont, François-Xavier; Laverre, Tiffany; Paulhac, Hélène; Gaillard, Jean-Michel; Beltran-Bech, Sophie

  10.24072/pcjournal.228 - Peer Community Journal, Volume 3 (2023), article no. e7.

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  Evolutionary Biology

  How does the mode of evolutionary divergence affect reproductive isolation?

  De Sanctis, Bianca; Schneemann, Hilde; Welch, John J.

  10.24072/pcjournal.226 - Peer Community Journal, Volume 3 (2023), article no. e6.

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  Paleontology

  Spatio-temporal diversity of dietary preferences and stress sensibilities of early and middle Miocene Rhinocerotidae from Eurasia: impact of climate changes

  Hullot, Manon; Merceron, Gildas; Antoine, Pierre-Olivier

  10.24072/pcjournal.222 - Peer Community Journal, Volume 3 (2023), article no. e5.

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  Ecology

  Ten simple rules for working with high resolution remote sensing data

  Mahood, Adam L.; Joseph, Maxwell B.; Spiers, Anna I.; Koontz, Michael J.; Ilangakoon, Nayani; Solvik, Kylen K.; Quarderer, Nathan; McGlinchy, Joe; Scholl, Victoria M.; St. Denis, Lise A.; Nagy, Chelsea; Braswell, Anna; Rossi, Matthew W.; Herwehe, Lauren; Wasser, Leah; Cattau, Megan E.; Iglesias, Virginia; Yao, Fangfang; Leyk, Stefan; Balch, Jennifer K.

  10.24072/pcjournal.223 - Peer Community Journal, Volume 3 (2023), article no. e4.

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  Ecotoxicology & Environmental Chemistry

  Chemical effects on ecological interactions within a model-experiment loop

  Lamonica, Dominique; Charles, Sandrine; Clément, Bernard; Lopes, Christelle

  10.24072/pcjournal.209 - Peer Community Journal, Volume 3 (2023), article no. e3.

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  Zoology

  Non-target effects of ten essential oils on the egg parasitoid Trichogramma evanescens

  van Oudenhove, Louise; Cazier, Aurélie; Fillaud, Marine; Lavoir, Anne-Violette; Fatnassi, Hicham; Perez, Guy; Calcagno, Vincent

  10.24072/pcjournal.212 - Peer Community Journal, Volume 3 (2023), article no. e2.

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  Archaeology

  Can growth in captivity alter the calcaneal microanatomy of a wild ungulate?

  Cottereau, Romain; Ortiz, Katia; Locatelli, Yann; Houssaye, Alexandra; Cucchi, Thomas

  10.24072/pcjournal.210 - Peer Community Journal, Volume 3 (2023), article no. e1.

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